Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_M02
         (956 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.14 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   5.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   5.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.8 bits (49), Expect(2) = 0.14
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 811  PPPPPPP 831
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 23.8 bits (49), Expect = 2.3
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 811  PPPPPPP 831
            PPPPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 23.4 bits (48), Expect(2) = 0.30
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 896  PPXPPPPP 919
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 906  PPPPPPXP 929
            PPPPPP P
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 909  PPPPPXPP 932
            PPPPP PP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 910  PPPXPPPP 933
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 22.2 bits (45), Expect(2) = 0.14
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 907  PPPPXPPPPG 936
            PPPP PP  G
Sbjct: 1356 PPPPPPPSSG 1365



 Score = 21.4 bits (43), Expect(2) = 0.30
 Identities = 6/7 (85%), Positives = 7/7 (100%)
 Frame = +2

Query: 812  RPPPPPP 832
            +PPPPPP
Sbjct: 1354 QPPPPPP 1360


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 898 PXXPPPPXPPPPGXXP 945
           P  P PP PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +1

Query: 607 PPNXAXPPAPPXPXG 651
           PP  A PP PP   G
Sbjct: 338 PPKPAPPPPPPSSSG 352



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 922 PPPPGXXPPPP 954
           PP P   PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 894 PPXXPPPPPP 923
           PP   PPPPP
Sbjct: 338 PPKPAPPPPP 347



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 894 PPXXPPPPPP 923
           P   PPPPPP
Sbjct: 339 PKPAPPPPPP 348


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 638  GGAGGXAXXGGXXGXGG 588
            GG G  A  GG  G GG
Sbjct: 1705 GGGGSLAGLGGLGGLGG 1721


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 5.4
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 638  GGAGGXAXXGGXXGXGG 588
            GG G  A  GG  G GG
Sbjct: 1701 GGGGSLAGLGGLGGLGG 1717


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/18 (44%), Positives = 8/18 (44%)
 Frame = +1

Query: 898 PXXPPPPXPPPPGXXPPP 951
           P  P    PP P   PPP
Sbjct: 31  PQAPQRGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 907 PPPPXPPPPGXXPPPP 954
           P P   PPPG  P  P
Sbjct: 40  PNPSQGPPPGGPPGAP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.154    0.551 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,554
Number of Sequences: 438
Number of extensions: 12445
Number of successful extensions: 43
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31444140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)