Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_L23
         (965 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       32   0.009
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   1.0  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.1  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.9 bits (69), Expect = 0.009
 Identities = 15/45 (33%), Positives = 15/45 (33%)
 Frame = +3

Query: 810 PXXXAXPPXXXXXXPPHXPXPXXPPPXXXXPPPSPPPXXPPXXPP 944
           P   A  P       P  P    PP     PPP  PP  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.0
 Identities = 14/40 (35%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
 Frame = +3

Query: 852 PPHXPXPXXPPPXXXX-PPPSPPPXXPPXXPP-XPPXXXP 965
           P   P P   P       PP+P    PP  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 29/142 (20%), Positives = 33/142 (23%), Gaps = 3/142 (2%)
 Frame = +3

Query: 549 PPPXPXXXXXXTXPXGXPXLRXLXSAPXPX*-NPXXXXXPTXXQNPPXNTPLXXXTXRAP 725
           PP  P        P   P        P P   +P           P  N P+     R P
Sbjct: 25  PPTRPARLRREAKPEAEPGNNRPIYIPQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPP 84

Query: 726 XXXXSXPXXSPPXK-TPXPTTXPXXXXXXPXXXAXPPXXXXXXPP-HXPXPXXPPPXXXX 899
                    S        P   P      P     P        P + P P  P P    
Sbjct: 85  HPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRR 144

Query: 900 PPPSPPPXXPPXXPPXPPXXXP 965
            P + P    P   P P    P
Sbjct: 145 EPEAEPGNNRPVYIPQPRPPHP 166


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 902 PPLPPPXXPPPXXXXP 949
           PP P P  PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.5
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 534 PPXPXPPPXP 563
           PP P PPP P
Sbjct: 338 PPKPAPPPPP 347


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,881
Number of Sequences: 438
Number of extensions: 8216
Number of successful extensions: 23
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31806957
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)