Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_L18
         (970 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   2.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.2  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 738 SXPPPXXHPPPPXPPXPXP 794
           S  PP   PPPP P    P
Sbjct: 335 SDTPPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 762 PPPPXPPXPXPXPXXP 809
           PP P PP P P    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +3

Query: 738 SXPPPXXHPPPPXPPXPXP 794
           S P P   PPP  PP   P
Sbjct: 38  SPPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 13/39 (33%), Positives = 13/39 (33%)
 Frame = +1

Query: 694 PXPXXPXPXPXXPPPXXPPXLXTPPPLXPPXXAPXPXXP 810
           P P  P   P  P    PP     PP   P  AP    P
Sbjct: 23  PQPS-PHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 22.2 bits (45), Expect = 7.3
 Identities = 9/26 (34%), Positives = 9/26 (34%)
 Frame = +3

Query: 744 PPPXXHPPPPXPPXPXPXPXXPXPPP 821
           P P  H  P  P    P      PPP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 9.6
 Identities = 10/34 (29%), Positives = 10/34 (29%)
 Frame = +3

Query: 720 PXXXPPSXPPPXXHPPPPXPPXPXPXPXXPXPPP 821
           P   P   P       PP P    P    P  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,525
Number of Sequences: 438
Number of extensions: 5909
Number of successful extensions: 12
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31927896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)