Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_L17
         (936 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    27   0.18 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   5.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   9.2  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 268 WTWKQLRNMQLGGNINAIQFFRTHGLVTEDARQKYSS 378
           WT KQ+ ++ + GN+N I+   T     +D   K+ S
Sbjct: 47  WTGKQISSLIIPGNVNMIRTHSTXPXEEDDGPYKWIS 83


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 160 WSSVTYGVFICLDCSAVHRSLGVH 231
           W++   GVF  +D  AV R  G+H
Sbjct: 480 WTNRERGVFKLVDSKAVSRLWGLH 503


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 197 SRHMNTPYVTDDHVGFLALQSKHA 126
           SRH N   +  D VGF A+ S ++
Sbjct: 267 SRHENVSILYADIVGFTAISSTYS 290


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 9.2
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +3

Query: 411 FTL*TGYENTWDQVTHRSYS 470
           + L  GY   WD+  HR Y+
Sbjct: 103 YILLVGYPPFWDEDQHRLYA 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,837
Number of Sequences: 438
Number of extensions: 4151
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 30597567
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)