Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_L15
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    31   0.30 
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    29   0.90 
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma...    29   1.2  
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom...    28   2.1  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    28   2.1  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   6.4  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   6.4  

>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 18/82 (21%), Positives = 38/82 (46%)
 Frame = +1

Query: 211 TLQKVKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMTCVSASAGVYVDMFTRFQ 390
           T   V+    TI+ ++F        E   + ++ N+   + ++ + A+  V V++ TR  
Sbjct: 720 TFHFVENPKATIDIESFWTPVDVVEEKSAKTYIDNLVGVMRLSVIKANDLVNVELPTRKS 779

Query: 391 AGFLSAIVGAGLMLMLIATPDN 456
             +   IVG  ++   + TP+N
Sbjct: 780 DPYARVIVGNSVVARTVYTPNN 801


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 739 WYKKCDCINRLTKVISDIDVNSVI-NVPPRNSQLPRSASIAAAREAYKYQ 593
           W K    +N++ + I + D  S I N+ P    L   A++AAAR+A  +Q
Sbjct: 507 WLKDSSSVNQVVEFIIENDFTSHIGNIQPNRFAL-EIAALAAARKALSFQ 555


>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 629

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -2

Query: 297 NWWFQSILKAVDKGLKIYCIHVFFYFLK 214
           NWW++S +     G+ ++   VF++F K
Sbjct: 553 NWWWRSFITPGFCGIYVFIFSVFYWFFK 580


>SPAC31G5.15 |||phosphatidylserine decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 980

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 256 FENLLYSCFFLLSEGSLNNDFNNMIYVILFEV*NIYSFQYDATTVFKFHKSQ*NKQII 83
           +  L Y  +  L++  L+ D N    + +F+V      Q D  T+  + KS+  KQI+
Sbjct: 67  YMKLKYGSYRALADNILSTDENRKEDIAVFDVPLPNGLQIDTFTLCLYRKSKWKKQIV 124


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = -1

Query: 718 INRLTKVISDIDVN--SVINVPPRNSQLPRSASIAAAREAYKYQGSAEQSSYYDRWVNYT 545
           ++ +T + S++DV+  S IN   +N  +P S+  +   +      + E  S +  W++YT
Sbjct: 279 LSPMTPLSSELDVSAFSEINSKIKNVDVPASSYSSPISKVSPSDVTEEDGSLFFFWMDYT 338

Query: 544 DIF 536
           +++
Sbjct: 339 EMY 341


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 211  TLQKVKKNMNTINFQTFVNSFQNRLEP 291
            TLQ  K N +T NF ++VN +    +P
Sbjct: 2171 TLQVFKSNEDTCNFYSYVNEYGESPKP 2197


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = -1

Query: 307 DADELVVPVDSESC*QRFENLLYSC----FFLLSEGSLNNDFNNMIYVILFEV*NIYSF 143
           + D+  +    E C  + EN L+S      FLL   SL+ND +N++ V      NI +F
Sbjct: 386 EIDQTTLRAFGEICTGKLENTLFSNSELNLFLLHYLSLDNDLSNILKVDFQNGHNICTF 444


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,694,410
Number of Sequences: 5004
Number of extensions: 77892
Number of successful extensions: 201
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)