Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_L12
         (998 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.11 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.59 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    28   1.8  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    28   1.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.1  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    24   6.2  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   9.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.11
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = +2

Query: 833  PHXXSPIAFXKNMPPPXQXPXPPPPPXXPPPXP 931
            P    P+      PP    P PPPPP   PP P
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = +2

Query: 872  PPPXQXPXPPPPPXXPPP 925
            PPP   P P  PP  PPP
Sbjct: 1716 PPPSAPPMPAGPPSAPPP 1733



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/31 (35%), Positives = 12/31 (38%)
 Frame = +2

Query: 833  PHXXSPIAFXKNMPPPXQXPXPPPPPXXPPP 925
            P   +P       PPP     PPPP   P P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPPPPSAPPMP 1724



 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
 Frame = +2

Query: 866  NMPPPXQXPXPP--PPPXXPPPXP 931
            ++PPP   P  P  PP   PPP P
Sbjct: 1713 SVPPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 875 PPXQXPXPPPPPXXPPP 925
           PP   P PPPPP   PP
Sbjct: 5   PPGNPPPPPPPPGFEPP 21



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 866 NMPPPXQXPXPPPPPXXPPPXP 931
           ++PP    P PPPP   PP  P
Sbjct: 3   SLPPGNPPPPPPPPGFEPPSQP 24



 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 866 NMPPPXQXPXPPPPPXXPPPXP 931
           N PPP   P   PP   PPP P
Sbjct: 8   NPPPPPPPPGFEPPSQPPPPPP 29


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
 Frame = +2

Query: 776  GXPRXPXPXXT---IXFXXAXXPHXXSPIAFXKNMPPPXQXPXPPPPPXXPPPXP 931
            G P  P P      +    +  P    P A    +PPP + P  P P    PP P
Sbjct: 1157 GAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVP 1211



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 890  PXPPPPPXXPPPXPXXN 940
            P P  PP  PPP P  N
Sbjct: 961  PRPAAPPSIPPPLPVSN 977


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 20/53 (37%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
 Frame = +2

Query: 791 PXPXXTIXFXXAXXPHXXSPIAFXKNMPPPXQXPXPPP------PPXXPPPXP 931
           P P   I    A  P    P A     PPP   P PPP      PP  PPP P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPP---PPPPPGVAGAGPPPPPPPPP 783


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +2

Query: 845 SPIAFXKNMPPPX-QXPXPPPPPXXPPP 925
           +P A  + MP P  Q   PPPPP  P P
Sbjct: 338 TPFAGNQVMPTPQVQGSRPPPPPPMPAP 365


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 10/25 (40%), Positives = 11/25 (44%)
 Frame = +2

Query: 848 PIAFXKNMPPPXQXPXPPPPPXXPP 922
           P  +      P   P PPPPP  PP
Sbjct: 224 PPTYTPKQADPLPAPPPPPPPTLPP 248



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +2

Query: 866 NMPPPXQXPXPPPPP 910
           ++P     P PPPPP
Sbjct: 182 SLPSDYNPPPPPPPP 196



 Score = 23.0 bits (47), Expect(2) = 2.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 896 PPPPPXXPP 922
           PPPPP  PP
Sbjct: 189 PPPPPPPPP 197


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 930 GXGGGXXGGGGGXGXWXGG 874
           G GGG  G GGG G + GG
Sbjct: 239 GFGGGPGGFGGGLGGFGGG 257



 Score = 27.5 bits (58), Expect = 3.1
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 930 GXGGGXXGGGGGXGXWXGG 874
           G GGG  G GGG G + GG
Sbjct: 246 GFGGGLGGFGGGPGGFGGG 264


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.8 bits (49), Expect(2) = 6.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 866 NMPPPXQXPXPPPPPXXP 919
           ++P     P PPPPP  P
Sbjct: 897 SLPTIITHPTPPPPPPLP 914



 Score = 20.6 bits (41), Expect(2) = 6.2
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 896 PPPPPXXPPPXP 931
           P  PP  PPP P
Sbjct: 942 PAFPPPPPPPPP 953


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 930 GXGGGXXGGGGGXGXWXGGG 871
           G  GG  G GGG G   GGG
Sbjct: 20  GFNGGRGGFGGGRGGARGGG 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,083
Number of Sequences: 5004
Number of extensions: 18740
Number of successful extensions: 209
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 517271174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)