Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_L12
         (998 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       28   0.15 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   7.5  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   7.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 0.15
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 833 PHXXSPIAFXKNMPP-PXQXPXPPPPPXXPP 922
           PH  SP A  +  PP P Q P P  PP  PP
Sbjct: 27  PHQ-SPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 21.8 bits (44), Expect = 10.0
 Identities = 9/28 (32%), Positives = 11/28 (39%)
 Frame = +2

Query: 848 PIAFXKNMPPPXQXPXPPPPPXXPPPXP 931
           PI   ++  P    P P P P   P  P
Sbjct: 7   PIITQQSQQPSSGAPGPQPSPHQSPQAP 34


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 4.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 875 PPXQXPXPPPPPXXPP 922
           PP   P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 899 PPPPXXPPPXP 931
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 884  QXPXPPPPP 910
            Q P PPPPP
Sbjct: 1353 QQPPPPPPP 1361



 Score = 22.2 bits (45), Expect = 7.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 884  QXPXPPPPP 910
            Q P PPPPP
Sbjct: 1354 QPPPPPPPP 1362


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 7.5
 Identities = 13/47 (27%), Positives = 16/47 (34%)
 Frame = +2

Query: 782 PRXPXPXXTIXFXXAXXPHXXSPIAFXKNMPPPXQXPXPPPPPXXPP 922
           PR   P  +I        H   P  F + +PP      PP  P   P
Sbjct: 357 PRPMGPWISIQEQIPRFRHIGPPTPFPRFIPPNAYRFRPPLNPRFGP 403


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 10.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 863  KNMPPPXQXPXPPPPP 910
            +N+P       PPPPP
Sbjct: 1849 RNIPVSGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,268
Number of Sequences: 438
Number of extensions: 3561
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33137286
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)