Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_L06
         (969 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         29   0.75 
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    28   2.3  
SPAPB2B4.07 |||ubiquitin family protein, human UBTD1 homolog|Sch...    27   5.3  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   6.9  

>SPCC417.15 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 43

 Score = 29.5 bits (63), Expect = 0.75
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 454 IFXRFYLRXYIHISRHC*LRISCCHHHNINPFLC 353
           IF R ++  +IH S HC      C +H INP +C
Sbjct: 10  IFFRLFI-IHIHFSHHC------CENHFINPLVC 36


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 259 IYTIHADINDNRIEKGVYEVDLNLN 333
           +YT+ A IND  + K + E D NLN
Sbjct: 117 MYTVSAKINDVEVVKVLLEPDFNLN 141


>SPAPB2B4.07 |||ubiquitin family protein, human UBTD1
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 26/102 (25%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
 Frame = +1

Query: 181 SVELYSTEDQVVGAFVISNAEKSDGKIYTIHADINDNRIEKGVYEVDLNLNTTVKILDK- 357
           S E++    +VV      NAE +          I +N I KGVY+         KI+ + 
Sbjct: 61  SKEIWDVLHKVVTLLYEGNAEAATEMALAADLTIPENDISKGVYDSKGTFYEIPKIVARI 120

Query: 358 -----GRDLCYDDDSTIYVASNDGIYVYXTXDKTXKKYGTXK 468
                 R    DD+    ++SND        D T K   + K
Sbjct: 121 PRAFAERKDSLDDEDDNMISSNDPTKSPEEHDTTTKSIASLK 162


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 323 KSTSYTPFSIRLSLISACIVYILPSLFSALDITKAPT 213
           ++T     S +LS  S  I  + PSL S   +TK+P+
Sbjct: 303 RTTEVPSISKQLSKSSTSIATVAPSLASVSSVTKSPS 339


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,173
Number of Sequences: 5004
Number of extensions: 41363
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 497299314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)