Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_L04
(898 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 36 0.030
Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical pr... 33 0.28
AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical ... 33 0.28
AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical ... 33 0.28
AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical ... 30 2.6
Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical pr... 29 6.0
AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical ... 29 6.0
Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical pr... 28 7.9
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 36.3 bits (80), Expect = 0.030
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +3
Query: 123 LCWLWPTLKTQLR*WKTLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHI---TW 293
LC+LW L T T T T T+ + T T++++ TT +TTV + T
Sbjct: 179 LCYLWVPLTTTTT--TTTTTTTTTSPMNTTTTTVLINGTTTTTVPTNETTTTVPLNGTTT 236
Query: 294 TLPKADLTSSLPLS 335
T+P + T++ PL+
Sbjct: 237 TVPTNETTTTSPLN 250
>Z81082-6|CAB03098.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 161 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 301
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-5|CAA22519.1| 279|Caenorhabditis elegans Hypothetical
protein F42G4.6 protein.
Length = 279
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 161 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 301
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AL034543-1|CAA22516.1| 243|Caenorhabditis elegans Hypothetical
protein Y81G3A.1 protein.
Length = 243
Score = 33.1 bits (72), Expect = 0.28
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = +2
Query: 161 VVENADSGNGYEPIDN--RPYIVNPPKDYNPNGNGYEPIDNGAYYVDPP 301
+VE+ D GN P ++ P +N PK + NG +P+DN YV+ P
Sbjct: 40 LVESVDDGNSRTPYNSIYEPLSLNKPKPDGRSSNGKKPVDN--EYVNLP 86
>AF025471-4|AAB71063.1| 151|Caenorhabditis elegans Hypothetical
protein R52.6 protein.
Length = 151
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 171 TLTQETATNLLTTARTSLILPKITTLMETATNLSTTVHITWTL 299
TL E T ++TT TS + K+ M AT + WTL
Sbjct: 47 TLPYEETTEMMTTMETSTMTEKVCPEMPAATACMDLTTLGWTL 89
>Z81520-4|CAE17808.1| 181|Caenorhabditis elegans Hypothetical
protein F31B9.4 protein.
Length = 181
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 138 PTLKTQLR*WKTLTQET--ATNLLTTARTSLILPKITTLMETATNLSTTVHITWTLP 302
P + T +R T T T A N+ TT T+ I P T T +TTV T T P
Sbjct: 17 PVITTTIRPNSTTTTTTSPAPNITTTTTTTTIAPPTNTTTTILTT-TTTVTTTTTSP 72
>AF040654-1|AAK21448.1| 1236|Caenorhabditis elegans Hypothetical
protein R06B10.1 protein.
Length = 1236
Score = 28.7 bits (61), Expect = 6.0
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Frame = +2
Query: 176 DSGNGYEPIDNRPYIVNPPKDYNPNGNGY--EPIDNGAYY---VDPPQ 304
D+ N Y+P++ +VNP K + NG+ + + + A Y VDPP+
Sbjct: 824 DNANAYKPMNPIEMVVNPTKYAKKSSNGFMEKVVKDIAEYPKPVDPPK 871
>Z82284-1|CAB05287.1| 226|Caenorhabditis elegans Hypothetical
protein T27E7.1 protein.
Length = 226
Score = 28.3 bits (60), Expect = 7.9
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
Frame = +2
Query: 167 ENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYE--PIDNGAYYVDPPQGRPYFKPT--PF 334
+N G + P N + N P + GY P PP+G Y++P P+
Sbjct: 34 QNPQPGASFPP--NMNPVTNGPGSWTQKPGGYNNGPGSGSFKSTKPPRGLVYYQPKNYPY 91
Query: 335 PGARGGK 355
+GGK
Sbjct: 92 KPGKGGK 98
>Z82262-1|CAB05151.2| 361|Caenorhabditis elegans Hypothetical
protein C43F9.4 protein.
Length = 361
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +2
Query: 101 FFMIFVLALLAMANAQD---PVKVVENADSGNGYEPIDNRPYI 220
F++IF++ ++ M + D P+ +N D N +EP RP+I
Sbjct: 29 FWVIFIVIIVVMTHFNDYSEPIVPWDNCDMNNTWEP-TTRPFI 70
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,380,439
Number of Sequences: 27780
Number of extensions: 290793
Number of successful extensions: 703
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2276333906
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -