Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_L01
(1009 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 33 0.43
Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical pr... 31 0.98
U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter... 31 1.3
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 30 3.0
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 30 3.0
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.0
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.0
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.0
Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical pr... 29 5.2
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 5.2
AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical ... 29 5.2
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 5.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 5.2
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 6.9
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 6.9
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 6.9
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 32.7 bits (71), Expect = 0.43
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPPXXG 813
G PP PPP G PG PPP G
Sbjct: 1584 GPPPLMGGPPPRLGMPPPGPPPPNGG 1609
>Z72502-7|CAA96592.1| 140|Caenorhabditis elegans Hypothetical
protein C08B6.10 protein.
Length = 140
Score = 31.5 bits (68), Expect = 0.98
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 745 PXXKXPPPPXGXKXPGGPPP 804
P + PPPP G PG PPP
Sbjct: 115 PWWRRPPPPWGPPPPGPPPP 134
>U58736-1|AAB00598.1| 302|Caenorhabditis elegans Dumpy : shorter
than wild-typeprotein 3 protein.
Length = 302
Score = 31.1 bits (67), Expect = 1.3
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPPXXG 813
G+PP PP P G + P GPP G
Sbjct: 221 GAPPGPPGPPGPPGPQGPPGPPGKDG 246
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 760 PPPPXGXKXPGGPPP 804
PPPP G + PGG PP
Sbjct: 335 PPPPPGMRYPGGMPP 349
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.9 bits (64), Expect = 3.0
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 760 PPPPXGXKXPGGPPP 804
PPPP G + PGG PP
Sbjct: 345 PPPPPGMRYPGGMPP 359
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPPXXG 813
G PP PPPP G P PPP G
Sbjct: 756 GGPPPP--PPPPGGCPPPPPPPPPGG 779
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPP 804
G P PPPP G K GGPPP
Sbjct: 766 GGCPPPPPPPPPGGFK--GGPPP 786
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = +1
Query: 742 PPXXKXPPPPXG-XKXPGGPPP 804
PP PPPP G GGPPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPP 728
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPPXXG 813
G PP PPPP G P PPP G
Sbjct: 756 GGPPPP--PPPPGGCPPPPPPPPPGG 779
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPP 804
G P PPPP G K GGPPP
Sbjct: 766 GGCPPPPPPPPPGGFK--GGPPP 786
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = +1
Query: 742 PPXXKXPPPPXG-XKXPGGPPP 804
PP PPPP G GGPPP
Sbjct: 707 PPITGGPPPPPGLPPITGGPPP 728
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/26 (50%), Positives = 13/26 (50%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPPXXG 813
G PP PPPP G P PPP G
Sbjct: 339 GGPPPP--PPPPGGCPPPPPPPPPGG 362
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPP 804
G P PPPP G K GGPPP
Sbjct: 349 GGCPPPPPPPPPGGFK--GGPPP 369
Score = 28.3 bits (60), Expect = 9.2
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = +1
Query: 742 PPXXKXPPPPXG-XKXPGGPPP 804
PP PPPP G GGPPP
Sbjct: 290 PPITGGPPPPPGLPPITGGPPP 311
>Z68215-7|CAA92453.1| 289|Caenorhabditis elegans Hypothetical
protein C53B4.5 protein.
Length = 289
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 742 PPXXKXPPPPXGXKXPGGPPPXXG 813
PP PP P G K P GPP G
Sbjct: 142 PPGPAGPPGPQGNKGPLGPPGPPG 165
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 760 PPPPXGXKXPGGPPP 804
PPPP G + GGPPP
Sbjct: 681 PPPPQGQQYYGGPPP 695
>AL022716-5|CAB97232.1| 291|Caenorhabditis elegans Hypothetical
protein C24F3.6 protein.
Length = 291
Score = 29.1 bits (62), Expect = 5.2
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +1
Query: 742 PPXXKXPPPPXGXKXPGGPPPXXG 813
PP PP P G K P GPP G
Sbjct: 144 PPGPAGPPGPDGNKGPLGPPGPPG 167
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.1 bits (62), Expect = 5.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +1
Query: 760 PPPPXGXKXPGGPPP 804
PPPP G + GGPPP
Sbjct: 681 PPPPQGQQYYGGPPP 695
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 5.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXPGGPPP 804
G+PP PPP G P PPP
Sbjct: 574 GAPPPPPPPPPMLGGPPPPPPPP 596
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXP----GGPPP 804
GSPP PPP G P G PPP
Sbjct: 305 GSPPTGSLPPPQAGGSPPPAGTGSPPP 331
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXP----GGPPP 804
GSPP PPP G P G PPP
Sbjct: 326 GSPPTGSLPPPQAGGSPPPAGTGSPPP 352
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 28.7 bits (61), Expect = 6.9
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 4/27 (14%)
Frame = +1
Query: 736 GSPPXXKXPPPPXGXKXP----GGPPP 804
GSPP PPP G P G PPP
Sbjct: 311 GSPPTGSLPPPQAGGSPPPAGTGSPPP 337
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,694,895
Number of Sequences: 27780
Number of extensions: 342698
Number of successful extensions: 1152
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1030
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2646946214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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