Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_K23
         (1028 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.013
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    25   0.84 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.013
 Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +3

Query: 897  PXPPPXPPXXXXPPXXXPPP-PXPXPPPXXXPPPPPXPXP 1013
            P P P P      P    PP P   PPP   P  PP   P
Sbjct: 21   PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 27.5 bits (58), Expect = 0.21
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 3/54 (5%)
 Frame = +1

Query: 94  PXPXPSPXXXXXXXXFXPPPXKX---PPXGPXXXXPQKNPFPPXXFXPPSRGAH 246
           P P PSP           PP      PP GP    P +N  P      P+ G H
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQN--PSQMMISPASGIH 72



 Score = 27.1 bits (57), Expect = 0.27
 Identities = 14/43 (32%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
 Frame = +1

Query: 889  PXPXXPPXPPXXXXPPXXXXPPPP--XPXPPPXXXPPPXXXPP 1011
            P P   P  P    PP     PPP   P  PP   P      P
Sbjct: 25   PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNPSQMMISP 67



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 12/39 (30%), Positives = 12/39 (30%)
 Frame = +3

Query: 903  PPPXPPXXXXPPXXXPPPPXPXPPPXXXPPPPPXPXPXA 1019
            P    P     P   P  P    PP     PPP   P A
Sbjct: 16   PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGA 54



 Score = 24.2 bits (50), Expect = 1.9
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -2

Query: 301 GGXPXPXXGVXXPPXGGPXGPP 236
           G  P P  G   PP GGP G P
Sbjct: 37  GSPPNPSQG---PPPGGPPGAP 55



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +2

Query: 776 PPPXRPPXXPPPSPP 820
           PPP  PP  PP   P
Sbjct: 46  PPPGGPPGAPPSQNP 60



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
 Frame = +2

Query: 782 PXRPPXXPPPS-PPXPPP 832
           P  P   PPP  PP  PP
Sbjct: 39  PPNPSQGPPPGGPPGAPP 56



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 11/36 (30%), Positives = 13/36 (36%)
 Frame = +2

Query: 152 PXKXPXXAXXNXXPKKTLSPRXXFXPXHGGPTRAPP 259
           P   P        P++   P     P  GGP  APP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 25.4 bits (53), Expect = 0.84
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -2

Query: 997 GGGGXXXGGGXGXGGGGXXXGGXXXXGGXGGGXG 896
           GG G    GG   G  G         GG GGG G
Sbjct: 20  GGPGSSSAGGVVTGASGGSIVVGANNGGGGGGLG 53



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = -1

Query: 995 GGGXXXGGGXGXGGGGXXXXGG 930
           GG    G   G GGGG     G
Sbjct: 36  GGSIVVGANNGGGGGGLGIASG 57


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 24.2 bits (50), Expect = 1.9
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 714 PXXPPPXPPPPPXAXP 761
           P  P P PPPP  + P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 803 PPPSPPXPPP 832
           P P+PP PPP
Sbjct: 339 PKPAPPPPPP 348



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 948 PPPPXPXPPPXXXPPP 995
           PP P P PPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 949 PPPPXPXPPPXXXPPP 996
           PP P P PPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.6 bits (46), Expect = 5.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 972  PPXXXPPPPP 1001
            PP   PPPPP
Sbjct: 338  PPKPAPPPPP 347



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 705 PPXPXXPPPXP 737
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 933 PPXXXPPPPXP 965
           PP   PPPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 969  PPPXXXPPPPP 1001
            PP    PPPPP
Sbjct: 338  PPKPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 723  PPPXPPPP 746
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 726  PPXPPPPP 749
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 7.8
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = -2

Query: 1006 GXGGGGGXXXGGGXGXGGGGXXXG 935
            G G G G   GG  G GG     G
Sbjct: 79   GRGKGRGHGKGGSRGRGGNRGRTG 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.160    0.634 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,714
Number of Sequences: 438
Number of extensions: 12937
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 34346676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)