Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_K10
         (894 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...   139   3e-33
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    31   1.5  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    29   4.5  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    29   5.9  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.9  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.9  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.9  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    29   5.9  
AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory car...    28   7.8  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   7.8  
AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synapt...    28   7.8  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score =  139 bits (336), Expect = 3e-33
 Identities = 66/99 (66%), Positives = 78/99 (78%), Gaps = 3/99 (3%)
 Frame = +3

Query: 147 IEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEE 326
           IEKYYTR+T DF  NKR+C+E+AII +KPLRNKIAG+ THLMRR+    VRGISIKLQEE
Sbjct: 17  IEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRRIERGPVRGISIKLQEE 76

Query: 327 ERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDFN 434
           ERERRDNY+PE+S ++      I+VD DT DMLK   FN
Sbjct: 77  ERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +1

Query: 229 SLLGIKLLDLPHI**GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 366
           SL GI++  L     G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 641 SLTGIEVAVLQ----GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 499  NYAXHHSHPWVAGCVSCXPLILLKSSIFNISLVSGSTSMMSCSRADTS 356
            N   HH HP     V+  P  L  ++  N+S ++ S+   S S + TS
Sbjct: 1382 NSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTS 1429


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 499  NYAXHHSHPWVAGCVSCXPLILLKSSIFNISLVSGSTSMMSCSRADTS 356
            N   HH HP     V+  P  L  ++  N+S ++ S+   S S + TS
Sbjct: 1382 NSHHHHHHPASTSSVASAPATLPSTTPSNLSRMASSSPSSSASNSGTS 1429


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = +3

Query: 402 TKDMLKMLDFNNINGLQLTQPATQGWLWW 488
           T D+ KML+ NN+NGL+L      G+L W
Sbjct: 107 TDDIGKMLNVNNLNGLELI--LLSGFLQW 133


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 791 PAXXXPPPPXXXAXXXFGPPXPXPPXLXP 877
           P    PPPP        GPP P PP   P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLP 736


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 791 PAXXXPPPPXXXAXXXFGPPXPXPPXLXP 877
           P    PPPP        GPP P PP   P
Sbjct: 708 PITGGPPPPPGLPPITGGPPPPPPPGGLP 736


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = +2

Query: 791 PAXXXPPPPXXXAXXXFGPPXPXPPXLXP 877
           P    PPPP        GPP P PP   P
Sbjct: 291 PITGGPPPPPGLPPITGGPPPPPPPGGLP 319


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 247 LLDLPHI**GVSDTRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 387
           +L L H+      TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 222 ILHLAHMYDMPFPTRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>AF225921-1|AAF36687.1|  335|Caenorhabditis elegans secretory
           carrier membrane protein protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 225 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 341
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = +3

Query: 297 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 455
           RG  ++  E+ + R D+    Y  + +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>AF003739-8|AAK84628.1|  335|Caenorhabditis elegans Scamp (synaptic
           vesicle protein)homolog protein 1 protein.
          Length = 335

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 225 TKPLRNKIAGFATHLMRRLRHSQVRGISIKLQEEERERR 341
           T  L NK AG    L R+ +  + R   ++++EEE +RR
Sbjct: 57  TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,807,177
Number of Sequences: 27780
Number of extensions: 299170
Number of successful extensions: 1272
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)