Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_K03
(1241 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 34 0.047
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 33 0.062
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 33 0.11
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 31 0.25
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.25
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 31 0.33
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 31 0.33
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 28 2.3
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.1
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.9 bits (74), Expect = 0.047
Identities = 21/60 (35%), Positives = 23/60 (38%)
Frame = -1
Query: 341 GRGGGXXXXXGXPXX*GXXGGGXEXHRXXRGMGGGXXXRGGXVXGGGGXGXGGXGPXGSR 162
GRGG G G GGG R G GG RGG GG G G G++
Sbjct: 10 GRGGSRGGRGGFNGGRGGFGGGRGGARGG-GRGGARGGRGGRGGARGGRGGSSGGRGGAK 68
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/54 (38%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = -1
Query: 341 GRGGGXXXXXGXPXX*GXX-GGGXEXHRXXRG-MGGGXXXRGGXVXGGGGXGXG 186
GRGG G G GGG R RG GG RGG G GG G
Sbjct: 17 GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 33.5 bits (73), Expect = 0.062
Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Frame = +3
Query: 162 ATPSRXAAPLPXXXXPXXXX-PPXXXXPTHPPPXPMXLXAAPXXSLXLRGPXPXXXAPPP 338
A P R A LP PP P+ PP P L + SL + P P
Sbjct: 394 AIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453
Query: 339 PXXPPXXLG 365
P PP G
Sbjct: 454 PIAPPLPAG 462
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 32.7 bits (71), Expect = 0.11
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = +3
Query: 249 PPPXPMXLXAAPXXS-LXLRGPXPXXXAPPPPXXPPXXLG 365
PPP P + P + + + P P PPPP PP G
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAG 772
Score = 26.2 bits (55), Expect = 9.4
Identities = 17/72 (23%), Positives = 17/72 (23%)
Frame = +3
Query: 120 PXPXXRXXXQPXXXATPSRXAAPLPXXXXPXXXXPPXXXXPTHPPPXPMXLXAAPXXSLX 299
P P P P P P P PP PPP P A
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSR 791
Query: 300 LRGPXPXXXAPP 335
P P P
Sbjct: 792 YYAPAPQAEPEP 803
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 31.5 bits (68), Expect = 0.25
Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 1/96 (1%)
Frame = +2
Query: 11 GGXGXFXXXXXXSLPXTPPXPPXYXXPPXXXXTXVXTXPXXKIXXPTXXXXDSLXXRXPP 190
GG S PP P P P I P+ + + PP
Sbjct: 107 GGMPKLRHIGKSSASAAPPSAPAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
Query: 191 XPXXXPPXXXPPAXXXPHPS-PAXXYGXLGRPRRLP 295
P PP P A PS P+ P ++P
Sbjct: 167 IPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVP 202
Score = 30.3 bits (65), Expect = 0.58
Identities = 26/94 (27%), Positives = 27/94 (28%), Gaps = 5/94 (5%)
Frame = +3
Query: 150 PXXXATPSRXAAPLPXXXXPXXXXPPXXXXPTHPPPXPMXLX-----AAPXXSLXLRGPX 314
P P A P P P P P+ PP P L AAP S
Sbjct: 133 PQSELRPPTSAPPRPSIPPPSPASAPPI--PSKAPPIPSSLPPPAQPAAPVKSPPSAPSL 190
Query: 315 PXXXAPPPPXXPPXXLGXLSXXXXXXRDXXCQPP 416
P P PP PP L R PP
Sbjct: 191 PSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPP 224
Score = 29.1 bits (62), Expect = 1.3
Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Frame = +2
Query: 185 PPXPXXX--PPXXXPPAXXXPHPSPAXXYGXLGRPRRLPXSXGXPTXLXXPPPAPQXTXA 358
PP P PP PP P PSPA + +P S P P +P +
Sbjct: 130 PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPS 189
Query: 359 LRXXLXFXXXXTXPP 403
L + PP
Sbjct: 190 LPSAVPPMPPKVPPP 204
Score = 26.6 bits (56), Expect = 7.1
Identities = 22/83 (26%), Positives = 26/83 (31%), Gaps = 1/83 (1%)
Frame = +2
Query: 47 SLPXT-PPXPPXYXXPPXXXXTXVXTXPXXKIXXPTXXXXDSLXXRXPPXPXXXPPXXXP 223
SLP PP PP PP T P ++ P P P
Sbjct: 189 SLPSAVPPMPPKVPPPPLSQAPVANTSSRPSSFAPPAGHAPNVTSESPKFPNRGPSI--- 245
Query: 224 PAXXXPHPSPAXXYGXLGRPRRL 292
P+ P P P Y RP R+
Sbjct: 246 PSASVP-PVPPSSYVLQQRPNRV 267
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.5 bits (68), Expect = 0.25
Identities = 25/98 (25%), Positives = 30/98 (30%), Gaps = 1/98 (1%)
Frame = +2
Query: 62 PPXP-PXYXXPPXXXXTXVXTXPXXKIXXPTXXXXDSLXXRXPPXPXXXPPXXXPPAXXX 238
PP P P PP + P + P S P P P PP+
Sbjct: 1140 PPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS-GIPPVPKPAAGVPPVPPPSEAP 1198
Query: 239 PHPSPAXXYGXLGRPRRLPXSXGXPTXLXXPPPAPQXT 352
P P P+ + P P PT PP P T
Sbjct: 1199 PVPKPSVGVPPVPPPSTAPP---VPTPSAGLPPVPVPT 1233
Score = 28.7 bits (61), Expect = 1.8
Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Frame = +3
Query: 147 QPXXXATPSRXAAPLPXXXXPXXXXPPXXXXPTHPPPXPMXLXAAPXXSLXLRG--PXPX 320
+P A P + P P PP + PP P AAP G P P
Sbjct: 1125 KPSVAAPPVPVPSGAPPVPKPSVAAPPVPAP-SGAPPVPKPSVAAPPVPAPSSGIPPVPK 1183
Query: 321 XXAPPPPXXPP 353
A PP PP
Sbjct: 1184 PAAGVPPVPPP 1194
Score = 27.1 bits (57), Expect = 5.4
Identities = 17/59 (28%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Frame = +3
Query: 186 PLPXXXXPXXXXP---PXXXXPTHPPPXPMXLXAAPXXSLXLRGPXPXXXAPPPPXXPP 353
PLP P P P PT PP P AP + P + P P P
Sbjct: 1025 PLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAP 1083
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 31.1 bits (67), Expect = 0.33
Identities = 18/45 (40%), Positives = 19/45 (42%)
Frame = +3
Query: 207 PXXXXPPXXXXPTHPPPXPMXLXAAPXXSLXLRGPXPXXXAPPPP 341
P PP PT PPP PM + P GP APPPP
Sbjct: 1694 PQSAAPPQMSAPT-PPPPPMSVPPPPSAPPMPAGP---PSAPPPP 1734
Score = 29.5 bits (63), Expect = 1.0
Identities = 16/44 (36%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Frame = +3
Query: 240 PTHPPPXP--MXLXAAPXXSLXLRGPXPXXXAPPPPXXPPXXLG 365
P HP P AAP P P PPPP PP G
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAG 1726
Score = 27.1 bits (57), Expect = 5.4
Identities = 16/56 (28%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Frame = +3
Query: 126 PXXRXXXQPXXXATPSRXAA---PLPXXXXPXXXXPPXXXXPTHPPPXPMXLXAAP 284
P +P A P A P P P PP P PP P+ +AP
Sbjct: 1686 PVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 31.1 bits (67), Expect = 0.33
Identities = 24/58 (41%), Positives = 24/58 (41%)
Frame = -1
Query: 341 GRGGGXXXXXGXPXX*GXXGGGXEXHRXXRGMGGGXXXRGGXVXGGGGXGXGGXGPXG 168
G GGG G P G GGG G GGG GG GG G G GG G G
Sbjct: 225 GFGGGPGGFEGGP---GGFGGGPG------GFGGGLGGFGGG-PGGFGGGPGGHGGPG 272
Score = 30.7 bits (66), Expect = 0.44
Identities = 22/58 (37%), Positives = 22/58 (37%)
Frame = -1
Query: 341 GRGGGXXXXXGXPXX*GXXGGGXEXHRXXRGMGGGXXXRGGXVXGGGGXGXGGXGPXG 168
G GG G G GG H G GGG GG G GG G GG G G
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGP---GGFEGGPGGFG-GGPGGFG 248
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/42 (38%), Positives = 16/42 (38%)
Frame = -1
Query: 293 GXXGGGXEXHRXXRGMGGGXXXRGGXVXGGGGXGXGGXGPXG 168
G GGG G GG GG GG G G GP G
Sbjct: 191 GGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGG 232
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/34 (47%), Positives = 16/34 (47%)
Frame = -1
Query: 284 GGGXEXHRXXRGMGGGXXXRGGXVXGGGGXGXGG 183
GGG R G GG RGG GG G G GG
Sbjct: 446 GGGSRGGRGGFGGRGGFGGRGG-FGGGRGRGRGG 478
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -1
Query: 254 RGMGGGXXXRGGXVXGGGGXGXGGXGPXGSR 162
RG GG RGG GG G G G G+R
Sbjct: 450 RGGRGGFGGRGGFGGRGGFGGGRGRGRGGAR 480
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 27.5 bits (58), Expect = 4.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = +3
Query: 183 APLPXXXXPXXXXPPXXXXPTHPPPXP 263
A LP P PP P+ PPP P
Sbjct: 2 ASLPPGNPPPPPPPPGFEPPSQPPPPP 28
Score = 22.6 bits (46), Expect(2) = 6.0
Identities = 8/13 (61%), Positives = 8/13 (61%)
Frame = +1
Query: 166 LPXGPXPPXPXPP 204
LP G PP P PP
Sbjct: 4 LPPGNPPPPPPPP 16
Score = 22.2 bits (45), Expect(2) = 6.0
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +1
Query: 277 PPPXXPXLXGXPXXXXXPPPRP 342
PPP P P PPP P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPP 30
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,361,627
Number of Sequences: 5004
Number of extensions: 17983
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 675349698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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