Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_K03
         (1241 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   4.2  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   5.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   7.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +3

Query: 48  HXPXHXPLPPXTAXPR 95
           H P H P PP T  P+
Sbjct: 461 HTPHHHPHPPETPGPQ 476


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 184 PPXPXPPPP 210
           PP P PPPP
Sbjct: 338 PPKPAPPPP 346



 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 178 PXPPXPXPPPP 210
           P  P P PPPP
Sbjct: 338 PPKPAPPPPPP 348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 249 PPPXPMXLXAAPXXSLXLRGPXPXXXAPPPPXXPP 353
           P P P     AP      RG  P     PPP  PP
Sbjct: 23  PQPSPHQSPQAPQ-----RGSPPNPSQGPPPGGPP 52


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,006
Number of Sequences: 438
Number of extensions: 4301
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 42382239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)