Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J12
         (941 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    29   0.72 
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    29   0.95 
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    29   0.95 
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    28   1.7  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   1.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    26   8.8  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    26   8.8  

>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 16/55 (29%), Positives = 29/55 (52%)
 Frame = +3

Query: 141 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKXDLTSSLPLS 305
           PT++ T T ++ T  T   + +TTT+      + T +  T T P  + T+ LP++
Sbjct: 102 PTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 346 NFLRYSXLPTASTRERGRLEVRSXLGTVHVICTVVDRFV 230
           NF     +P  STR+R  + +R   G +H+IC   D  +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 17/42 (40%), Positives = 18/42 (42%)
 Frame = +3

Query: 495 PXXSXPXXXTCAPPLTHXPXXTLAXPTTXXAVNTTCXXPXTS 620
           P  S     T APP TH    T   P T   VNTT   P T+
Sbjct: 98  PTTSLNTTTTTAPPTTHVNSTTTVVPPTTH-VNTTTVVPPTT 138



 Score = 29.1 bits (62), Expect = 0.95
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +3

Query: 522 TCAPPLTHXPXXTLAXPTTXXAVNTTCXXPXTS 620
           T  PP TH    T+  PTT   VNTT   P T+
Sbjct: 120 TVVPPTTHVNTTTVVPPTTH--VNTTTVVPPTT 150


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
 Frame = +2

Query: 206 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 310
           DYN N  N Y PI N  Y+++   G    PYF     PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 159 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKXDLTSSLPLSL 308
           A+ L +++ T+ + P  +T  ET ++ S+    T T+     TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281


>SPAC29B12.10c |||OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = +3

Query: 114 FLSSVCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVHITWTV 269
           + + +CW+WP  K    N L    + L ILP T    +   N +      W +
Sbjct: 357 YFTVLCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 25.8 bits (54), Expect = 8.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 203 KDYNPNGNGYEPIDNGAYYVDRPQGRP 283
           K Y  +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,890,592
Number of Sequences: 5004
Number of extensions: 31778
Number of successful extensions: 136
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 479324640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)