Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J12
         (941 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0267 - 22538631-22539452                                         32   0.58 
03_06_0471 + 34169562-34169892,34170121-34170347                       31   1.0  
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           31   1.8  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    30   2.3  
12_01_0841 - 7873458-7874225                                           29   5.4  
06_03_0790 - 24636805-24637770                                         28   9.4  

>03_05_0267 - 22538631-22539452
          Length = 273

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
 Frame = -3

Query: 660 GGGGXQGXGXXXRQMXXGXGRWC*RXXXWWGXPKSG--XVXEXGGXRX*XXGXGRXG 496
           GGGG  G G   R +  G GRW  R   WW    +    + + GG      G G  G
Sbjct: 78  GGGGGLGDGGGGR-LGDGGGRWLGRRRRWWARATAAVDGLGDSGGGGLGDGGGGGLG 133


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 1.0
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 161 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 310
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 161 YEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFKPTPFPGARG 319
           Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   P P  GA G
Sbjct: 394 YAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSGPPPSYGAGG 448


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = +2

Query: 149 QGNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 304
           QG  Y+P   R     PP+   P    Y P   G  Y  +PQG+PY  P P+
Sbjct: 246 QGETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291


>12_01_0841 - 7873458-7874225
          Length = 255

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 18/56 (32%), Positives = 23/56 (41%)
 Frame = -3

Query: 801 GXGCXXGGWXEWG*LGGXXGGEGGAXXAXXXXXXXXXXXXXXGVWXXGGGGXQGXG 634
           G G   GG+ + G  GG  GG+GG   +              G +  GGGG  G G
Sbjct: 61  GGGASGGGYGQGG-GGGGGGGQGGGSGSGYGSGYGQGGGASGGGYGKGGGGGGGGG 115


>06_03_0790 - 24636805-24637770
          Length = 321

 Score = 28.3 bits (60), Expect = 9.4
 Identities = 16/49 (32%), Positives = 17/49 (34%)
 Frame = -3

Query: 780 GWXEWG*LGGXXGGEGGAXXAXXXXXXXXXXXXXXGVWXXGGGGXQGXG 634
           GW  W   GG  GG GG                  G    GGGG +G G
Sbjct: 76  GWGVWSGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGRGGG 124


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,447,024
Number of Sequences: 37544
Number of extensions: 283191
Number of successful extensions: 2110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2023
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)