Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J11
         (990 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.44 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   1.0  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.3  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   2.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    26   9.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.3 bits (65), Expect = 0.44
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 542 PPXPPXXGAPXQXPGXXPPPPP 607
           PP PP  G     P   PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 542 PPXPPXXGAPXQXPGXXPPPPP 607
           PP PP    P   P   P PPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPP 754


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = +2

Query: 542  PPXPPXXGAPXQXPGXXPPPPP 607
            PP  P   AP Q     PPPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPP 1711


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 18/72 (25%), Positives = 20/72 (27%)
 Frame = +3

Query: 351 PPXPXGKKKKKXGXKXXXXXXPPPRGGGPXPXXXXKNGXARXPXQKXPXATNXPSPPKTX 530
           PP P                 PPP    P P      G    P       +N P+PP   
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPP----PPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAI 395

Query: 531 GGXPXPXPPXXG 566
            G   P  P  G
Sbjct: 396 PGRSAPALPPLG 407



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +2

Query: 530 GXXAPPXPPXXGAPXQXPGXXPPP 601
           G  APP PP   AP    G  PPP
Sbjct: 357 GRSAPPPPPPRSAP--STGRQPPP 378


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 20/64 (31%), Positives = 21/64 (32%)
 Frame = +3

Query: 414  PPPRGGGPXPXXXXKNGXARXPXQKXPXATNXPSPPKTXGGXPXPXPPXXGPPXKXRDXX 593
            P P G  P P    K   A  P  K   A   P  P   G  P P P    PP       
Sbjct: 1086 PAPSGIPPVP----KPSVAAPPVPKPSVAV--PPVPAPSGAPPVPKPSVAAPPVPVPSGA 1139

Query: 594  PRLP 605
            P +P
Sbjct: 1140 PPVP 1143



 Score = 25.8 bits (54), Expect = 9.4
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 492  PXATNXPSPPKTXGGXPXPXPPXXGP 569
            P  T+ P  PK+  G P   PP   P
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAP 1069


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = +2

Query: 530 GXXAPPXPPXXGAPXQXPGXXPPPPPXF 613
           G   PP PP    P   P   PPPPP +
Sbjct: 7   GNPPPPPPPPGFEPPSQPP--PPPPPGY 32


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = +3

Query: 477 PXQKXPX--ATNXPSPPKTXGGXPXPXPPXXGPP 572
           P Q  P    T+ P PP T      P PP  G P
Sbjct: 479 PSQNAPFIPGTSAPLPPTTFAPPGVPLPPIPGAP 512


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,191,082
Number of Sequences: 5004
Number of extensions: 13428
Number of successful extensions: 133
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 511279616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)