Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J06
         (881 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   2.7  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    27   4.7  
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb...    26   6.2  
SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    26   6.2  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   8.2  

>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -3

Query: 444 RSLVLRWLSIGRXKSNINCMMGRFNGCLVIFWIGNTANIPS 322
           +SLVLR + +G  +  I C    +N   ++  +G  A + S
Sbjct: 327 QSLVLRLIHLGSIEHAIKCFQSSYNASFLVNIVGVVATLSS 367


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
 Frame = -1

Query: 374 SMDASLFSGLVTL--RTYLLFGSSFTSXIFEGRIGWSAVLGA 255
           S + SLFS       R    F   F    F G++GW  +LG+
Sbjct: 347 SSNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGS 388


>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 454 EPSRETASSNASSGLTPSQYIFDMGNRYRRHASDDQXELRHHN 582
           +PS+   S + S+ +TPS+Y+F +   Y  +    Q ++   N
Sbjct: 84  DPSQICQSFDESNIITPSKYLFPLSKDYSPNEGLFQTDMNEKN 126


>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -2

Query: 541 VGNDFPYQIYIGLGLNRRKRWKRQFLSRVPKPQVPCVTVALDRP 410
           V +D+ Y   I  G N     KR+ L + P P  PC  +A  RP
Sbjct: 206 VESDYGYSPLINTG-NPTSGLKRKALKQFPLPPDPCQALANLRP 248


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 244  NIPRAP-STADHPILPSKIXDVKLDPNRRYVRSVTNPENNEASIESSHHTVDI 399
            ++P AP S A +  LP    + K+DP    ++++  P   +A  ++S   VD+
Sbjct: 1939 SMPNAPPSVASNAKLPPASNNRKVDPLEDILQAMPPPTTRKARGKTSKRYVDV 1991


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,045,764
Number of Sequences: 5004
Number of extensions: 57564
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)