Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J06
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753...    34   0.17 
08_02_1178 + 24958623-24959894                                         30   2.8  

>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
            18577344-18577458,18578179-18578333,18578673-18580621,
            18580691-18581372,18581550-18581621,18582558-18583199,
            18583301-18583402,18585011-18585100
          Length = 2192

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = +1

Query: 250  PRAPSTADHPILPSKIXDVKLDPNRRYVRSVTNPENNEASIESSHHT-VDIGLXPADREP 426
            P  P T  H I  S + D+     R  VR   +P+N ++ +  S +T  ++ + P    P
Sbjct: 2064 PEPPETGTHRIEFSAVDDMDTGSCRSPVRDTPDPDNQKSELSGSGNTPTELSVLPLVDAP 2123

Query: 427  P*HKGPAVLEPSRETASS 480
                 PAV+  S +  S+
Sbjct: 2124 GTSSEPAVVPVSSDEEST 2141


>08_02_1178 + 24958623-24959894
          Length = 423

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 493 RRKRWKRQFLSRVPKPQVPCVTVALDRP 410
           RR RW+   LSR+  P +PC+  + + P
Sbjct: 53  RRARWELSVLSRLAHPHLPCLLGSAETP 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,824,894
Number of Sequences: 37544
Number of extensions: 377466
Number of successful extensions: 967
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)