Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J05
         (914 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy...   156   5e-39
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    29   1.2  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    27   2.8  
SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr 1|...    27   4.9  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    27   4.9  
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    26   6.5  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    26   8.6  
SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr...    26   8.6  

>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 354

 Score =  156 bits (378), Expect = 5e-39
 Identities = 62/119 (52%), Positives = 88/119 (73%)
 Frame = +1

Query: 217 NRQNWEDADFPILCQTCLGDNPYIXMTKEKYGKECKICSRPFTVFRWCPGARMRFKKTEI 396
           N+Q WED +FP +C+ CLGDN Y+ MTKE  G+ECKICS+P T+FRW      +  KT+I
Sbjct: 10  NKQEWEDVEFPSICERCLGDNSYVRMTKEPLGQECKICSKPCTIFRWIKERGQKPGKTQI 69

Query: 397 CQTCSKLKNVCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSD 573
           C  C++ KN CQ+C+LDL++GLPI +RDAALK+ +  P N++N+E++ QN +  LSN +
Sbjct: 70  CVGCARYKNCCQSCMLDLQFGLPIALRDAALKLVESGPTNDINREFFAQNQQRLLSNGE 128


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 475 RDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLVRLA 636
           R+A  K Q+DL +N         NL+S+ ++       + L  K +SD  +R A
Sbjct: 153 RNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSKKYTSDRKIRNA 206


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +1

Query: 208 NTYNRQNWEDADFPILCQTCLGDNPYIXMTKEKYGKECKICSRPF 342
           NT+    W  A F I C  C      + + + +    CK C+ PF
Sbjct: 54  NTHPFLPWRKAKFHIPCVICGACKNSLTVEEYRSTVHCKYCNHPF 98


>SPAC1782.06c |||prohibitin Phb1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 282

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +2

Query: 119 ERSVLFDRLSCVESKIISRKD---TPWLHRS 202
           +R+VLFDRLS V+ +++        PWL ++
Sbjct: 33  KRAVLFDRLSGVQKQVVQEGTHFLIPWLQKA 63


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 360 SRSKNAFQENRNMSDLFETEKCLSNMFIGFGIWSANPSE 476
           S  KN F +N +++ +      LSN+   + I+S  PSE
Sbjct: 92  SPKKNDFDDNMSLNSIVTMGSILSNVSSVWSIFSTAPSE 130


>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +1

Query: 448 LEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSLKSKGSSDLLV 627
           + Y +  +  D++ +++  + RN  N   YI+NL  +L   DP+    +LK K ++ L  
Sbjct: 648 ISYAMTEEQIDSSTELRQSMTRNVQNYLDYIKNLYHRLGPYDPS--LLALKQKTATMLAA 705

Query: 628 RL 633
            L
Sbjct: 706 ML 707


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/58 (31%), Positives = 25/58 (43%)
 Frame = +1

Query: 424 VCQTCLLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQPTNSL 597
           VC      LEYGL     D A K   +    E  + + IQ+LE  +   D T+P   +
Sbjct: 452 VCMYIDDGLEYGLFRHAGDGAFKPATNYENFEYEERFLIQDLE--VIGVDTTKPVEPI 507


>SPBP35G2.03c |sgo1||shugoshin Sgo1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 319

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 12/48 (25%), Positives = 27/48 (56%)
 Frame = +1

Query: 439 LLDLEYGLPIQVRDAALKVQDDLPRNEVNKEYYIQNLESQLSNSDPTQ 582
           ++ +   L I++R++  ++QD +  N   K Y ++ LE++  N   T+
Sbjct: 32  IIKINTQLSIKIRESENEIQDLIQENFTLKSYLVK-LEARFRNQSQTE 78


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,356,171
Number of Sequences: 5004
Number of extensions: 69910
Number of successful extensions: 182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)