Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J04
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    33   0.003
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   2.1  

>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 33.5 bits (73), Expect = 0.003
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
 Frame = +3

Query: 600 RPPDEHHKNRRSSQRWXNPDRTIXIPGVSPPXXPLXRPPXSXP-XRLPEYLSXLSPFXXT 776
           RPP    +    S+     +R + IP   PP   L R P + P    P Y+    P    
Sbjct: 82  RPPHPRLRREAESEAEPGNNRPVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPR 141

Query: 777 VGXSPXPPPXXXSPXXGXXSXPPXP 851
           +   P   P    P       PP P
Sbjct: 142 LRREPEAEPGNNRPVYIPQPRPPHP 166



 Score = 27.1 bits (57), Expect = 0.23
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 5/91 (5%)
 Frame = +3

Query: 600 RPPDEHHKNRRSSQRWXNP--DRTIXIPGVSPPXXPLXRPPXSXP---XRLPEYLSXLSP 764
           RPP  H + RR ++    P  +R I IP   PP   L R   S        P Y+    P
Sbjct: 54  RPP--HPRLRREAEPKAEPGNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRP 111

Query: 765 FXXTVGXSPXPPPXXXSPXXGXXSXPPXPGL 857
               +   P   P    P       PP P L
Sbjct: 112 PHPRLRREPEAEPGNNRPVYIPQPRPPHPRL 142


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 533 SHVXSCVIPLILWITVLPPLSELIPLAA 450
           S + S V+ L+L   +LPP S ++PL A
Sbjct: 270 SILLSLVVFLLLVSKILPPTSLVLPLIA 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,394
Number of Sequences: 438
Number of extensions: 4570
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)