Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J03
         (887 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26594-1|CAA81348.1|  144|Homo sapiens T cell receptor beta chai...    31   7.4  
X04932-1|CAA28596.1|  140|Homo sapiens protein ( Human mRNA for ...    31   7.4  
U66060-1|AAC13323.1|  115|Homo sapiens V_segment translation pro...    31   7.4  
U66059-28|AAC80199.1|  115|Homo sapiens V_segment translation pr...    31   7.4  
BC110303-1|AAI10304.1|  312|Homo sapiens Unknown (protein for MG...    31   7.4  
AJ004872-1|CAA06181.1|  309|Homo sapiens TCR beta chain protein.       31   7.4  
AF043179-1|AAC08953.1|  313|Homo sapiens T cell receptor beta ch...    31   7.4  
AF009663-2|AAB63900.1|  115|Homo sapiens TCRBV13S1 protein.            31   7.4  
AF009662-1|AAC18429.1|  115|Homo sapiens TCRBV6S5 protein.             31   7.4  

>Z26594-1|CAA81348.1|  144|Homo sapiens T cell receptor beta chain
           variable region protein.
          Length = 144

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>X04932-1|CAA28596.1|  140|Homo sapiens protein ( Human mRNA for
           T-cell receptor beta-chain (clone HBVP34) (Family
           Member: V beta 13.2, D beta 1.1, J beta 1.2, C beta 1). 
           ).
          Length = 140

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>U66060-1|AAC13323.1|  115|Homo sapiens V_segment translation
           product protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>U66059-28|AAC80199.1|  115|Homo sapiens V_segment translation
           product protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>BC110303-1|AAI10304.1|  312|Homo sapiens Unknown (protein for
           MGC:117429) protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>AJ004872-1|CAA06181.1|  309|Homo sapiens TCR beta chain protein.
          Length = 309

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>AF043179-1|AAC08953.1|  313|Homo sapiens T cell receptor beta chain
           protein.
          Length = 313

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>AF009663-2|AAB63900.1|  115|Homo sapiens TCRBV13S1 protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


>AF009662-1|AAC18429.1|  115|Homo sapiens TCRBV6S5 protein.
          Length = 115

 Score = 30.7 bits (66), Expect = 7.4
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = +1

Query: 127 LCCAVLILNDAGPVNAGV 180
           LCCA L L  AGPVNAGV
Sbjct: 6   LCCAALSLLWAGPVNAGV 23


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,657,528
Number of Sequences: 237096
Number of extensions: 1363692
Number of successful extensions: 2644
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2644
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11381686510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)