Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_J01
         (1371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    29   1.1  

>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
            Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 19/90 (21%), Positives = 25/90 (27%)
 Frame = +1

Query: 997  QAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXPXA 1176
            + P H       R      +P    PPP   H+P     P           +P  + P  
Sbjct: 183  ERPKHHEFDDEDREFPAHHEPGEHMPPPPMHHKPGEHMPP------PPMHHEPGEHMPPP 236

Query: 1177 XTHNXPXXRTKPHAXEHRRTXTEHPXXXHH 1266
              H+ P     P    H       P   HH
Sbjct: 237  PMHHEPGEHMPPPPMHHEPGEHMPPPPMHH 266



 Score = 27.9 bits (59), Expect = 3.5
 Identities = 19/75 (25%), Positives = 24/75 (32%)
 Frame = +1

Query: 1054 QPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXPXAXTHNXPXXRTKPHAXEHRR 1233
            +P    PPP   H P     P           +P  + P    H+ P     P   +H  
Sbjct: 293  EPGEHMPPPPMHHEPGEHMPP------PPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHE 346

Query: 1234 TXTEHPXXXHHXRAP 1278
               EH    HH R P
Sbjct: 347  -LEEHEGPEHH-RGP 359


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.139    0.473 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,464
Number of Sequences: 5004
Number of extensions: 20194
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 757114818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)