Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_J01
(1371 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U91935-1|AAB49728.1| 648|Homo sapiens retina-derived POU-domain... 33 1.8
U91934-1|AAB49727.1| 684|Homo sapiens retina-derived POU-domain... 33 1.8
X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage f... 32 5.6
X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein. 32 5.6
X16660-1|CAA34646.1| 223|Homo sapiens p25 protein protein. 32 5.6
BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetit... 32 5.6
BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein. 32 5.6
BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein. 32 5.6
AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetit... 32 5.6
AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetit... 32 5.6
AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenyl... 32 5.6
AB208996-1|BAD92233.1| 489|Homo sapiens ST8 alpha-N-acetyl-neur... 32 5.6
AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing ... 31 7.4
AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens ... 31 9.8
>U91935-1|AAB49728.1| 648|Homo sapiens retina-derived POU-domain
factor-1 protein.
Length = 648
Score = 33.5 bits (73), Expect = 1.8
Identities = 18/66 (27%), Positives = 24/66 (36%)
Frame = +1
Query: 991 PXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXP 1170
P + P P PQ QQP + PP P +P Q P P + P
Sbjct: 190 PPPSTNQHPQPAPQAPSQSQQQPLQPTPP---QQPPPASQQPPAPTSQLQQAPQPQQHQP 246
Query: 1171 XAXTHN 1188
+ +HN
Sbjct: 247 HSHSHN 252
>U91934-1|AAB49727.1| 684|Homo sapiens retina-derived POU-domain
factor-1 protein.
Length = 684
Score = 33.5 bits (73), Expect = 1.8
Identities = 18/66 (27%), Positives = 24/66 (36%)
Frame = +1
Query: 991 PXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXP 1170
P + P P PQ QQP + PP P +P Q P P + P
Sbjct: 190 PPPSTNQHPQPAPQAPSQSQQQPLQPTPP---QQPPPASQQPPAPTSQLQQAPQPQQHQP 246
Query: 1171 XAXTHN 1188
+ +HN
Sbjct: 247 HSHSHN 252
>X67337-1|CAA47752.1| 551|Homo sapiens Human pre-mRNA cleavage factor
I 68 kDa subunit protein.
Length = 551
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +1
Query: 973 PXDPRXPXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPD 1152
P P P Q P P P P R P PPP P G A P N P
Sbjct: 306 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPG-APPPAPHVNPAFFPP 364
Query: 1153 P 1155
P
Sbjct: 365 P 365
>X67336-1|CAA47751.1| 551|Homo sapiens HPBRII-7 protein.
Length = 551
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +1
Query: 973 PXDPRXPXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPD 1152
P P P Q P P P P R P PPP P G A P N P
Sbjct: 306 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPG-APPPAPHVNPAFFPP 364
Query: 1153 P 1155
P
Sbjct: 365 P 365
>X16660-1|CAA34646.1| 223|Homo sapiens p25 protein protein.
Length = 223
Score = 31.9 bits (69), Expect = 5.6
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = +1
Query: 970 HPXDPRXPXQAPXHXPTPRP 1029
HP DPR P AP H PRP
Sbjct: 45 HPQDPRSPGPAPRHRRPPRP 64
>BC036187-1|AAH36187.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 31.9 bits (69), Expect = 5.6
Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 1/115 (0%)
Frame = +1
Query: 1000 APXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXPXAX 1179
+P P+PR + PRR PPP R R + + + +
Sbjct: 310 SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 369
Query: 1180 THNXPXXRT-KPHAXEHRRTXTEHPXXXHHXRAPPXXXXTXXRQQXTSXKPXXTQ 1341
P RT P R + + P H +PP R T + T+
Sbjct: 370 PPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTR 424
>BC005000-1|AAH05000.1| 478|Homo sapiens CPSF6 protein protein.
Length = 478
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +1
Query: 973 PXDPRXPXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPD 1152
P P P Q P P P P R P PPP P G A P N P
Sbjct: 233 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPG-APPPAPHVNPAFFPP 291
Query: 1153 P 1155
P
Sbjct: 292 P 292
>BC000714-1|AAH00714.1| 588|Homo sapiens CPSF6 protein protein.
Length = 588
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +1
Query: 973 PXDPRXPXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPD 1152
P P P Q P P P P R P PPP P G A P N P
Sbjct: 343 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPG-APPPAPHVNPAFFPP 401
Query: 1153 P 1155
P
Sbjct: 402 P 402
>AL445686-4|CAI14682.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 31.9 bits (69), Expect = 5.6
Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 1/115 (0%)
Frame = +1
Query: 1000 APXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXPXAX 1179
+P P+PR + PRR PPP R R + + + +
Sbjct: 310 SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 369
Query: 1180 THNXPXXRT-KPHAXEHRRTXTEHPXXXHHXRAPPXXXXTXXRQQXTSXKPXXTQ 1341
P RT P R + + P H +PP R T + T+
Sbjct: 370 PPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTR 424
>AL445648-3|CAH73090.1| 904|Homo sapiens serine/arginine repetitive
matrix 1 protein.
Length = 904
Score = 31.9 bits (69), Expect = 5.6
Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 1/115 (0%)
Frame = +1
Query: 1000 APXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXPXAX 1179
+P P+PR + PRR PPP R R + + + +
Sbjct: 310 SPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRS 369
Query: 1180 THNXPXXRT-KPHAXEHRRTXTEHPXXXHHXRAPPXXXXTXXRQQXTSXKPXXTQ 1341
P RT P R + + P H +PP R T + T+
Sbjct: 370 PPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTR 424
>AK223568-1|BAD97288.1| 551|Homo sapiens cleavage and polyadenylation
specific factor 6, 68 kD subunit variant protein.
Length = 551
Score = 31.9 bits (69), Expect = 5.6
Identities = 20/61 (32%), Positives = 20/61 (32%)
Frame = +1
Query: 973 PXDPRXPXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPD 1152
P P P Q P P P P R P PPP P G A P N P
Sbjct: 306 PPGPPPPQQGPPPPPGPFPPRPPGPLGPPLTLAPPPHLPGPPPG-APPPAPHVNPAFFPP 364
Query: 1153 P 1155
P
Sbjct: 365 P 365
>AB208996-1|BAD92233.1| 489|Homo sapiens ST8
alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 3
variant protein.
Length = 489
Score = 31.9 bits (69), Expect = 5.6
Identities = 25/76 (32%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Frame = +1
Query: 1057 PRRXXPPPXRXHRPXGXARPT-RXXXNXTQXPDPAPNXPXAXTHNXPXXRTKPHAXEHRR 1233
PRR PP P G ARP R P P P A H P PHA
Sbjct: 14 PRRRAAPPSSCSAP-GPARPCLRGPAALRGSCQPQPPAPVASPHPRPGPPPPPHARALTH 72
Query: 1234 TXTE-HPXXXHHXRAP 1278
T T H H P
Sbjct: 73 THTHTHTHTHTHIYTP 88
>AF386649-1|AAL26987.1| 1362|Homo sapiens bromodomain-containing 4
protein.
Length = 1362
Score = 31.5 bits (68), Expect = 7.4
Identities = 19/100 (19%), Positives = 30/100 (30%)
Frame = +1
Query: 982 PRXPXQAPXHXPTPRPQRXXXXXQQPRRXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAP 1161
P P P H + + P + PPP + H+P + T P P
Sbjct: 954 PPPPLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQPPPRPVHLQPMQFSTHIQQPPP 1013
Query: 1162 NXPXAXTHNXPXXRTKPHAXEHRRTXTEHPXXXHHXRAPP 1281
H P + P + +H H ++ P
Sbjct: 1014 PQGQQPPHPPPGQQPPPPQPAKPQQVIQHHHSPRHHKSDP 1053
>AK128837-1|BAC87637.1| 286|Homo sapiens protein ( Homo sapiens cDNA
FLJ46366 fis, clone TESTI4051388. ).
Length = 286
Score = 31.1 bits (67), Expect = 9.8
Identities = 32/124 (25%), Positives = 35/124 (28%), Gaps = 3/124 (2%)
Frame = +1
Query: 1003 PXHXPTPRPQRXXXXXQQPR---RXXPPPXRXHRPXGXARPTRXXXNXTQXPDPAPNXPX 1173
P PT P R PR R PP RP A PTR P P
Sbjct: 41 PRASPTRTPPRASPRRTPPRASPRRTPPRASLTRPPTRAPPTRMPPTAPPTRTPPTASPA 100
Query: 1174 AXTHNXPXXRTKPHAXEHRRTXTEHPXXXHHXRAPPXXXXTXXRQQXTSXKPXXTQTXXR 1353
RT P A R P RA P + T + +T R
Sbjct: 101 RTPPTESPARTPPTASPARTPPRASPTRT-PPRASPRRTPSTASPTRTPPRASPRRTPPR 159
Query: 1354 DHPT 1365
PT
Sbjct: 160 ASPT 163
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.313 0.139 0.473
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,662,042
Number of Sequences: 237096
Number of extensions: 2049616
Number of successful extensions: 5034
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4775
length of database: 76,859,062
effective HSP length: 93
effective length of database: 54,809,134
effective search space used: 19895715642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
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