Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_I24
(959 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 40 5e-04
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 37 0.004
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 36 0.011
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 34 0.016
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 33 0.045
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 33 0.060
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 32 0.10
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.32
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 30 0.56
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 28 1.7
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.0
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 5.2
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 39.9 bits (89), Expect = 5e-04
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Frame = +2
Query: 446 PLXPXLTXSTXXXXLPXXPPXAPXXXPPPPPHAXXXPVIXP-PARSDPXPXVXXXRXLPP 622
P P L S P PP P P PP P+ P PA P + PP
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
Query: 623 PPPXXXPXPP 652
P P P P
Sbjct: 478 PAPAPAPAAP 487
Score = 34.3 bits (75), Expect = 0.026
Identities = 36/133 (27%), Positives = 39/133 (29%)
Frame = +2
Query: 446 PLXPXLTXSTXXXXLPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPP 625
P P S +P PP PPPPP + P P P PP
Sbjct: 337 PPPPPPPRSNAAGSIPL-PPQGRSAPPPPPPRS------APSTGRQPPPLSSSRAVSNPP 389
Query: 626 PPXXXPXPPPXXYHFAXXXFXXXXRTRRSRPRXXXGAXVPXRPSAXLPXPXPLSXGPPPX 805
P PP A +R S P VP PS P L PP
Sbjct: 390 AP-----PPAIPGRSAPALPPLGNASRTSTP------PVPTPPSLPPSAPPSLPPSAPPS 438
Query: 806 XPXXRPHXPARPP 844
P P P PP
Sbjct: 439 LPMGAPAAPPLPP 451
Score = 34.3 bits (75), Expect = 0.026
Identities = 37/147 (25%), Positives = 42/147 (28%), Gaps = 2/147 (1%)
Frame = +2
Query: 407 PXRPXRXXGREGXPLXPXLTXSTXXXXLPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDP 586
P P R PL P + P P AP PPP + V PPA
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPP----PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPA 394
Query: 587 XPXVXXXRXLPPPPPXXXPXPPPXXYHFAXXXFXXXXRTRRSRPRXXXGAXV--PXRPSA 760
P LPP PP + + P GA P PSA
Sbjct: 395 IPG-RSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSA 453
Query: 761 XLPXPXPLSXGPPPXXPXXRPHXPARP 841
+ P P P P P P P
Sbjct: 454 PIAPPLPAGMPAAPPLPPAAPAPPPAP 480
Score = 31.5 bits (68), Expect = 0.18
Identities = 32/137 (23%), Positives = 40/137 (29%), Gaps = 4/137 (2%)
Frame = +2
Query: 446 PLXPXLTXSTXXXXLPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDP---XPXVXXXRXL 616
P+ P + S +P AP PPP P PP P P +
Sbjct: 231 PIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKP 290
Query: 617 PPPPPXXXPXPPPXXYH-FAXXXFXXXXRTRRSRPRXXXGAXVPXRPSAXLPXPXPLSXG 793
P PPP + R R +P G+ P P P + G
Sbjct: 291 PLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPP-PPPRSNAAG 349
Query: 794 PPPXXPXXRPHXPARPP 844
P P R P PP
Sbjct: 350 SIPLPPQGRSAPPPPPP 366
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 37.1 bits (82), Expect = 0.004
Identities = 30/126 (23%), Positives = 37/126 (29%)
Frame = +2
Query: 455 PXLTXSTXXXXLPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPX 634
P + T +P AP PP P + P I P+ + P P +P P
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVA 1100
Query: 635 XXPXPPPXXYHFAXXXFXXXXRTRRSRPRXXXGAXVPXRPSAXLPXPXPLSXGPPPXXPX 814
P P P P+ A PS P P P PP P
Sbjct: 1101 APPVPKPS----VAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPS 1156
Query: 815 XRPHXP 832
P P
Sbjct: 1157 GAPPVP 1162
Score = 35.5 bits (78), Expect = 0.011
Identities = 28/111 (25%), Positives = 33/111 (29%)
Frame = +2
Query: 500 PPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPPPXXYHFAXX 679
P AP PP P + P + P+ + P P P P P P P A
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKP---SVAAP 1169
Query: 680 XFXXXXRTRRSRPRXXXGAXVPXRPSAXLPXPXPLSXGPPPXXPXXRPHXP 832
P+ G PS P P P PP P P P
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220
Score = 33.9 bits (74), Expect = 0.034
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 503 PXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPPP 655
P PP P A P + PP+ + P P PPP P P P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTP 1222
Score = 33.1 bits (72), Expect = 0.060
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = +2
Query: 491 PXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPPP 655
P P + P P P + PV P A P P +P P P PPP
Sbjct: 1159 PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213
Score = 32.7 bits (71), Expect = 0.079
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +2
Query: 488 LPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPP 652
+P PP P PP P + P + PP+ + P P LPP P PP
Sbjct: 1188 VPPVPP--PSEAPPVPKPSVGVPPVPPPSTAPPVP--TPSAGLPPVPVPTAKAPP 1238
Score = 31.9 bits (69), Expect = 0.14
Identities = 32/118 (27%), Positives = 35/118 (29%), Gaps = 7/118 (5%)
Frame = +2
Query: 500 PPXAPXXXPP-PPPHAXXXPVIXPPARSDPXPXVXXXRXLPPP----PPXXXP-XPPPXX 661
P AP PP P P PV P P P +P P PP P PP
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Query: 662 YHFAXXXFXXXXRTRRSRPRXXXGA-XVPXRPSAXLPXPXPLSXGPPPXXPXXRPHXP 832
P+ A VP S P P P + PP P P P
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201
Score = 29.9 bits (64), Expect = 0.56
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +2
Query: 488 LPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPPP 655
+P P A P PPP + PV P P P +P P P P P
Sbjct: 1178 IPPVPKPAAGVPPVPPP-SEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Score = 28.3 bits (60), Expect = 1.7
Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Frame = +2
Query: 488 LPXXPPXAPXXXPP-PPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXP 649
+P PP P PP P P A PV P A++ P P P P P
Sbjct: 1207 VPPVPP--PSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
Score = 27.5 bits (58), Expect = 3.0
Identities = 29/107 (27%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Frame = +2
Query: 527 PPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPPPXXYHFAXXXFXXXXRTR 706
PP H P+ P + S P PP P PP A T
Sbjct: 986 PPKDHPPSAPLSKPVSTSPAAPLARV-----PPVPKLSSKAPPVPLPSADAPPIPVPSTA 1040
Query: 707 RSRPRXXXGAXVPXR----PSAXLPXPXPLSXGPPPXXPXXRPHXPA 835
P VP PSA P P P S P P P PA
Sbjct: 1041 PPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPA 1087
Score = 27.5 bits (58), Expect = 3.0
Identities = 32/128 (25%), Positives = 38/128 (29%), Gaps = 4/128 (3%)
Frame = +2
Query: 440 GXPLXPXLTXSTXXXXLPXXPPXAPXXX---PPPPPHAXXXPVIXPPARSDPXPXVXXXR 610
G P P + + +P P P PP P + PV P + P P
Sbjct: 1119 GAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGI 1178
Query: 611 XLPPPPPXXXPXPPPXXYHFAXXXFXXXXRTRRSRPRXXXGAXVPXRPSAXL-PXPXPLS 787
PP P PP P VP PSA L P P P +
Sbjct: 1179 ---PPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP-TPSAGLPPVPVPTA 1234
Query: 788 XGPPPXXP 811
PP P
Sbjct: 1235 KAPPVPAP 1242
Score = 26.2 bits (55), Expect = 6.9
Identities = 28/106 (26%), Positives = 31/106 (29%), Gaps = 5/106 (4%)
Frame = +2
Query: 500 PPXAPXXXP----PPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPP-PXXY 664
PP AP P P P A PV P S P V PP P PP P
Sbjct: 991 PPSAPLSKPVSTSPAAPLARVPPV---PKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPT 1047
Query: 665 HFAXXXFXXXXRTRRSRPRXXXGAXVPXRPSAXLPXPXPLSXGPPP 802
P + +P P+ P P G PP
Sbjct: 1048 STPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 35.5 bits (78), Expect = 0.011
Identities = 19/48 (39%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Frame = +2
Query: 524 PPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPP----XXXPXPPP 655
PPPPP A P P P P PPPPP P PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 33.5 bits (73), Expect = 0.045
Identities = 17/44 (38%), Positives = 19/44 (43%)
Frame = +2
Query: 500 PPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPP 631
P AP P PPP P++ P P P V PPPPP
Sbjct: 742 PTPAPAPIPVPPP----APIMGGPPPPPPPPGVAGAGPPPPPPP 781
Score = 29.5 bits (63), Expect = 0.74
Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Frame = +2
Query: 488 LPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXV-XXXRXLPPPPPXXXPXP 649
+P PP PPPPP PP P P V P P P P
Sbjct: 749 IPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Score = 27.9 bits (59), Expect = 2.2
Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Frame = +2
Query: 707 RSRPRXXXGAXVPXRPSAXLPXPXP--LSXGPPPXXP-----XXRPHXPARPPXXXSXG 862
+S P VP A +P P P + GPPP P P P PP S G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 34.3 bits (75), Expect = 0.026
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 710 SRPRXXXGAXVPXRPSAXLPXPXPLSXGPPPXXPXXRPHXPARPP 844
S P + P + SA P P P+S PPP P P+ PP
Sbjct: 1688 STPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 31.1 bits (67), Expect(2) = 0.016
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 542 AXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPP 652
A PV PP R PPPPP P PP
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPP 1718
Score = 29.9 bits (64), Expect = 0.56
Identities = 15/51 (29%), Positives = 17/51 (33%)
Frame = +2
Query: 503 PXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPPP 655
P P PP P + P + P P V PP P PPP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPP 1733
Score = 29.5 bits (63), Expect = 0.74
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = +2
Query: 500 PPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPP 652
PP PPPPP + + PP + P P PP P P P
Sbjct: 1699 PPQMSAPTPPPPPMS-----VPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
Score = 22.6 bits (46), Expect(2) = 0.016
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +2
Query: 740 VPXRPSAXLPXPXPLSXGPPPXXPXXRPHXP 832
VP PSA P S PPP P P
Sbjct: 1714 VPPPPSAPPMPAGPPSAPPPPLPASSAPSVP 1744
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 33.5 bits (73), Expect = 0.045
Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -3
Query: 654 GGGXGXXXGGGGGRXRXXXTXGX-GSERAGGXXTGXXXAXGGGGGXXQGAXGGXXG 490
GGG G GG GG G G G G GGG G +G GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGG 242
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 33.1 bits (72), Expect = 0.060
Identities = 22/57 (38%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Frame = -3
Query: 651 GGXGXXXGGGGG--RXRXXXTXGXGSERAGGXXTGXXXAXGGGGGXXQGAXGGXXGR 487
GG G GG GG R G G R GG G GG GG G G GR
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRG-GARGGRGGRGGARGGRGGSSGGR 64
Score = 32.3 bits (70), Expect = 0.10
Identities = 22/56 (39%), Positives = 23/56 (41%)
Frame = -3
Query: 657 KGGGXGXXXGGGGGRXRXXXTXGXGSERAGGXXTGXXXAXGGGGGXXQGAXGGXXG 490
+GG G G GGR G G R G G A GG GG GA GG G
Sbjct: 11 RGGSRGGRGGFNGGR------GGFGGGRGGARGGGRGGARGGRGGRG-GARGGRGG 59
Score = 32.3 bits (70), Expect = 0.10
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Frame = -3
Query: 657 KGGGXGXXXGGGGGRXRXXXTXGXGSERAG-GXXTGXXXAXGGGGGXXQGAXGG 499
+GG G G GGGR G G R G G G GG G GA GG
Sbjct: 18 RGGFNGGRGGFGGGRG-GARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70
Score = 30.7 bits (66), Expect = 0.32
Identities = 17/47 (36%), Positives = 19/47 (40%)
Frame = -3
Query: 630 GGGGGRXRXXXTXGXGSERAGGXXTGXXXAXGGGGGXXQGAXGGXXG 490
G GGR G + GG G A GGG G +G GG G
Sbjct: 6 GSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGG 52
Score = 29.9 bits (64), Expect = 0.56
Identities = 18/48 (37%), Positives = 19/48 (39%)
Frame = -3
Query: 651 GGXGXXXGGGGGRXRXXXTXGXGSERAGGXXTGXXXAXGGGGGXXQGA 508
GG G GG G R G G GG G + GG GG GA
Sbjct: 26 GGFGGGRGGARGGGRGGARGGRGGR--GGARGGRGGSSGGRGGAKGGA 71
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 32.3 bits (70), Expect = 0.10
Identities = 19/53 (35%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Frame = +2
Query: 500 PPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLP-PPPPXXXPXPPP 655
PP AP PP P P PP S P P +P PP PPP
Sbjct: 124 PPSAPA--PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPP 174
Score = 32.3 bits (70), Expect = 0.10
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +2
Query: 491 PXXPPXAPXXXPPPPPHAXXXPV-IXPPAR-SDPXPXVXXXRXLP---PPPPXXXPXPP 652
P PP +P PP P A P + PPA+ + P LP PP P P PP
Sbjct: 147 PSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPP 205
Score = 28.7 bits (61), Expect = 1.3
Identities = 16/47 (34%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Frame = +1
Query: 487 PASXAPPRTLXXXXPPAXRXPLSRXXPPXP-L*PPXXXXXXXXSSPP 624
P + APPR PA P+ PP P PP SPP
Sbjct: 139 PPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP 185
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 5/60 (8%)
Frame = +2
Query: 491 PXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPP-----PXXXPXPPP 655
P P P PP P A P PP S P + PP P P PP
Sbjct: 140 PTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPP 199
Score = 28.7 bits (61), Expect = 1.3
Identities = 20/57 (35%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Frame = +2
Query: 491 PXXPPXAPXXXPP-----PPPHAXXXPVIXPP-ARSDPXPXVXXXRXLPPPPPXXXP 643
P P P PP PPP PV PP A S P +PPPP P
Sbjct: 154 PASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPPPLSQAP 210
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.7 bits (66), Expect = 0.32
Identities = 21/55 (38%), Positives = 22/55 (40%)
Frame = -3
Query: 651 GGXGXXXGGGGGRXRXXXTXGXGSERAGGXXTGXXXAXGGGGGXXQGAXGGXXGR 487
GG G GG GG R G G GG G G GG G+ GG GR
Sbjct: 145 GGRGGSRGGFGGNSR----GGFGGGSRGGF--GGGSRGGSRGGFRGGSRGGFRGR 193
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 29.9 bits (64), Expect = 0.56
Identities = 22/76 (28%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Frame = +2
Query: 431 GREGXPLXPXLTXSTXXXXLPXXPPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXR 610
GR P P LP PP P PP + P+ P+R+ +
Sbjct: 216 GRAVSPEIPPTYTPKQADPLPAPPPPPPPTLPPQSTNTSQLPM---PSRN--VNNLGSQV 270
Query: 611 XLPPPP--PXXXPXPP 652
+PPPP P P PP
Sbjct: 271 NIPPPPATPSQPPRPP 286
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 28.3 bits (60), Expect = 1.7
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 194 APXGXR*NRSRRILSDLIWSSDIPYLQPENHCSKLSIXAVVYTQR 60
AP + N RR+L L W + PEN SK S+ A+V R
Sbjct: 647 APEISKENPGRRLLEKLGWYAGKGLGHPENEGSKDSLRAIVKVSR 691
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 27.5 bits (58), Expect = 3.0
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 3/97 (3%)
Frame = +2
Query: 500 PPXAPXXXPPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPP--PXXXPXPPPXXYHFA 673
P + PP P P+R P V +PPPP P PP + +
Sbjct: 100 PSYSQPSQPPKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPPPSYSS 159
Query: 674 XXXFXXXXRTRRSRPRXXXGAXVP-XRPSAXLPXPXP 781
+ +T +S + +P +A LP P P
Sbjct: 160 SGSY---SQTYQSNANYTASSPLPTASANAPLPVPPP 193
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.6 bits (56), Expect = 5.2
Identities = 16/53 (30%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Frame = +2
Query: 500 PPXAPXXX--PPPPPHAXXXPVIXPPARSDPXPXVXXXRXLPPPPPXXXPXPP 652
PP P P PP + PP S P P P PP PP
Sbjct: 1011 PPKQPANRVVPLPPTASQRASAYEPPTVSVPSPSALSPSVTPQLPPVSSRLPP 1063
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,847,080
Number of Sequences: 5004
Number of extensions: 27882
Number of successful extensions: 256
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 491307756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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