Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_I20
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 31 0.22
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ... 27 2.7
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.7
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 27 4.7
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 26 6.3
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc... 26 6.3
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 26 6.3
SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion cytoch... 26 8.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 8.3
SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion ... 26 8.3
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 31.1 bits (67), Expect = 0.22
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +2
Query: 167 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 334
L E + V D +S E K KH + + +KS + ++ K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169
>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 774
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 248 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGL 346
K+ +T+ NKL+ ++ + +YAY L LQ L
Sbjct: 35 KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.7
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 176 QLYNSVVVADYDSAVEKSKHLYEEKKS 256
QL N DY+ E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 26.6 bits (56), Expect = 4.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +2
Query: 368 VSQLSSDLSSPKTRLSLCTSATV 436
VS L +DL + KT+LS SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188
>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 153 TSESAAYRDATKRHRITIAGFIFGASSPVCYPRTNSNLKEFPIVR 19
++ S + RDA K H++T +G + C P+T + I+R
Sbjct: 209 STTSYSIRDADKHHKLTTSGVTKMNITERCKPKTTIQTDKKHIIR 253
>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 520 VSWKLIALWEXNKVYFKILNTERNQYLVLGVGTNWNG 630
+ +K I L++ N+ KILN R V+ VGT NG
Sbjct: 254 IFFKCIPLFKNNEEAEKILNVNRLLDRVMFVGTKVNG 290
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 505 KTSPRVSWKLIALWEXNKVYFKILNTERNQYLVLGVGTN 621
K SP+V+WK +W K K +++ +LG G++
Sbjct: 28 KASPKVNWKTHIIWRSLK-NVKCIDSFHGNNEILGAGSS 65
>SPAC1420.04c |cox1101|cox11, SPAPB17E12.01c, cox11|fusion
cytochrome c oxidase assembly protein Cox1101,
mitochondrial ribosomal protein
Rsm22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 13 YRPHYREFLKI*VRSWVTHRTRRSKDEARYSYSMSFRGIS 132
++ H+ FL R +V RRS D + YSY + +GI+
Sbjct: 344 FKQHF--FLSPFSRLYVPRSHRRSSDRSHYSYVVIQKGIT 381
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 8.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 423 VHKLNRVFGEDKSELNWETIPD 358
+H + EDKS+L +ETIPD
Sbjct: 9 IHPVRHSKYEDKSKLPFETIPD 30
>SPAC19B12.13 |cox1102|cox11, cox11-b, cox11, SPAPB8E5.01|fusion
cytochrome c oxidase assembly protein Cox1102,
mitochondrial ribosomal protein
Rsm2202|Schizosaccharomyces pombe|chr 1|||Manual
Length = 753
Score = 25.8 bits (54), Expect = 8.3
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 13 YRPHYREFLKI*VRSWVTHRTRRSKDEARYSYSMSFRGIS 132
++ H+ FL R +V RRS D + YSY + +GI+
Sbjct: 344 FKQHF--FLSPFSRLYVPRSHRRSSDRSHYSYVVIQKGIT 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,195
Number of Sequences: 5004
Number of extensions: 49951
Number of successful extensions: 184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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