Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I18
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.095
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.13 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    25   0.43 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.67 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   1.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    23   6.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    26   8.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
 Frame = +2

Query: 800 PPPXPX----PPPPXPPXXXXXXPXPPXP 874
           PPP P     PPPP PP      P PP P
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780



 Score = 29.1 bits (62), Expect = 0.88
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 800 PPPXPXPPPPXPPXXXXXXPXPPXP 874
           P P P P PP  P      P PP P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 800 PPPXPXPPPPXPPXXXXXXPXPPXP 874
           P P P P P  PP      P PP P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 806 PXPXPPPPXPPXXXXXXPXPPXP 874
           P P PPPP         P PP P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 800 PPPXPXPPPPXPPXXXXXXPXPPXP 874
           PP  P PPPP P       P PP P
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPP 29



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +2

Query: 803 PPXPXPPPPXPPXXXXXXPXPP 868
           PP P PPP   P      P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = +2

Query: 800 PPPXPXPPPPXPPXXXXXXPXPPXP 874
           PPP P PP   PP      P PP P
Sbjct: 9   PPPPPPPPGFEPP---SQPPPPPPP 30


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.4 bits (53), Expect(2) = 0.43
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +2

Query: 806 PXPXPPPPXPP 838
           P P PPPP PP
Sbjct: 234 PLPAPPPPPPP 244



 Score = 23.0 bits (47), Expect(2) = 0.43
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 800 PPPXPXPPP 826
           PPP P PPP
Sbjct: 189 PPPPPPPPP 197



 Score = 23.0 bits (47), Expect(2) = 9.3
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 803 PPXPXPPPP 829
           PP P PPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 21.8 bits (44), Expect(2) = 9.3
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +2

Query: 800 PPPXPXPPPP 829
           P P P PPPP
Sbjct: 234 PLPAPPPPPP 243



 Score = 21.8 bits (44), Expect(2) = 9.3
 Identities = 9/24 (37%), Positives = 9/24 (37%)
 Frame = +2

Query: 803 PPXPXPPPPXPPXXXXXXPXPPXP 874
           P  P PPPP  P         P P
Sbjct: 236 PAPPPPPPPTLPPQSTNTSQLPMP 259



 Score = 20.6 bits (41), Expect(2) = 9.3
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +2

Query: 812 PXPPPPXPPXXXXXXPXPPXP 874
           P  PP   P      P PP P
Sbjct: 221 PEIPPTYTPKQADPLPAPPPP 241


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = +2

Query: 800  PPPXPXPPPPXPPXXXXXXPXPPXP 874
            PPP   PPPP  P      P  P P
Sbjct: 1709 PPPMSVPPPPSAPPMPAGPPSAPPP 1733



 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
 Frame = +3

Query: 798  PPPPXPXPPPP--XPXXXXXXSXXPP 869
            PPPP   PPPP   P      S  PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 867 GGXGXXXXXXGGXGGGGXGXGGG 799
           GG G      GG GGG  G GGG
Sbjct: 228 GGPGGFEGGPGGFGGGPGGFGGG 250



 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 867 GGXGXXXXXXGGXGGGGXGXGGG 799
           GG G      GG GGG  G GGG
Sbjct: 242 GGPGGFGGGLGGFGGGPGGFGGG 264



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 867 GGXGXXXXXXGGXGGGGXGXGGG 799
           GG G      GG GGG  G GGG
Sbjct: 235 GGPGGFGGGPGGFGGGLGGFGGG 257


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +2

Query: 764  NVLFNKKXLCXXPPPXPXPPPPXPP 838
            N++ N   +    P  P PPPP PP
Sbjct: 929  NIVANDTSVAGVMPAFPPPPPPPPP 953


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect(2) = 6.1
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 803 PPXPXPPPP 829
           PP P PPPP
Sbjct: 306 PPPPPPPPP 314



 Score = 21.4 bits (43), Expect(2) = 6.1
 Identities = 8/21 (38%), Positives = 8/21 (38%)
 Frame = +2

Query: 812 PXPPPPXPPXXXXXXPXPPXP 874
           P PPPP P          P P
Sbjct: 307 PPPPPPPPSNDFWKDSNEPAP 327


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = -2

Query: 867 GGXGXXXXXXGGXGGGGXGXGGG 799
           GG G      GG  GG  G GGG
Sbjct: 9   GGRGGSRGGRGGFNGGRGGFGGG 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,328
Number of Sequences: 5004
Number of extensions: 56932
Number of successful extensions: 331
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 255
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)