Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I09
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...   314   1e-86
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   2.7  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   3.6  
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   8.2  
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    26   8.2  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   8.2  
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ...    26   8.2  

>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score =  314 bits (770), Expect = 1e-86
 Identities = 145/200 (72%), Positives = 171/200 (85%), Gaps = 1/200 (0%)
 Frame = +2

Query: 206 YKIADEKLAEWGRKEIMLAEKEMPGLMACRRKYAPAKILKGARIAGSLHMTVQTAVLIET 385
           YK+AD  LA +GRKE+ +AE EMPGL+A R KYA ++ LKGARIAG LHMT+QTAVLIET
Sbjct: 6   YKVADISLAAFGRKELEIAENEMPGLIAVREKYAKSQPLKGARIAGCLHMTIQTAVLIET 65

Query: 386 LIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKGETDDEYIWCIEQTL-IFPDGKP 562
           L+ LGAEV WSS NIYSTQD AAAA+ A G+P++AWKGET++EY+WCIEQ L  FP GKP
Sbjct: 66  LVALGAEVTWSSCNIYSTQDHAAAAIAATGVPVFAWKGETEEEYLWCIEQQLKSFPSGKP 125

Query: 563 LNMILDDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHXLYXMFREGLLKVPAINVNDSV 742
           LNMILDDGGDLT LVH ++P+LL D++GI+EETTTGVH LY MF+E  LKVPAINVNDSV
Sbjct: 126 LNMILDDGGDLTALVHERHPELLVDIRGISEETTTGVHNLYKMFKENKLKVPAINVNDSV 185

Query: 743 TKSQFDXLYGCXESLLDGIK 802
           TKS+FD L+GC ESL+DGIK
Sbjct: 186 TKSKFDNLFGCKESLVDGIK 205



 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 18/31 (58%), Positives = 20/31 (64%)
 Frame = +3

Query: 780 SLCSTESKGTDXXIAGXVCVXAGYGDVGKGC 872
           SL     + TD  IAG V V AG+GDVGKGC
Sbjct: 199 SLVDGIKRATDVMIAGKVAVVAGFGDVGKGC 229


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 2/72 (2%)
 Frame = +2

Query: 104 PIYFRYFNKNNLKRKQQVNLP*VYQTLYYKMKPPYKIADEKL--AEWGRKEIMLAEKEMP 277
           P YF +  KN     +   LP  YQ +  +  PPY     KL     G KE  +A  + P
Sbjct: 8   PYYFTH-EKNLNNASKYSELPIAYQEIPLQSLPPYPKVASKLKGVVAGGKENNIASFQKP 66

Query: 278 GLMACRRKYAPA 313
              A  R Y P+
Sbjct: 67  SSKA-TRPYIPS 77


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 337 YSGTFEYFSWSIFPTTCHKAWHFFLC*HNFFSAPFSQFLVSDFVRRLHFVVQSLIY 170
           Y   +  ++W  F  T +K  H+FL  H +   P + F+         F V S+++
Sbjct: 356 YDDWWNCWTWDQFARTWNKPVHYFLLRHVY--VPLNSFMSKSLSTFFTFFVSSVLH 409


>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 674

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 642 FTSFKRSGYLVWTKFVKSPPSSKIILRGF 556
           +  F++ G L + K VK P + + + RGF
Sbjct: 294 YNHFRQFGPLAYAKLVKDPATDRSLGRGF 322


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 122 NTGNKLGLDIVERVRVHRTLRILEESNLKNSLVV 21
           N   KLG++IV +        ILE + L+ +L+V
Sbjct: 465 NFDQKLGVEIVRKAITRPAQTILENAGLEGNLIV 498


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -1

Query: 738 ESLTLIAGTFKSPSRNIXYKXCTPVVVSSV-IPFTSFKRSG 619
           E  TLI   F SPS ++     TP V+ S+   F + +R+G
Sbjct: 350 EPNTLIFQNFSSPSTSLSAPKDTPAVIQSINTSFLNNERAG 390


>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 247 RNYVSRERNARPYGMSSEICSS*NTQRCQNSRQLTHDSTNSGSY*DFNRIGSRGTMVQQ* 426
           R+Y    R ++PY  S    SS        S  ++  STNS      N   SR T + + 
Sbjct: 90  RSYSGNPRLSKPYASSKLAASSRTASYQAMSYSVSPTSTNSSVATSLNYQSSRETGISKD 149

Query: 427 H 429
           H
Sbjct: 150 H 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,675
Number of Sequences: 5004
Number of extensions: 70710
Number of successful extensions: 187
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)