Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I08
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr 1|...    78   1e-15
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    38   0.002
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    29   1.2  
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|...    27   3.6  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   8.3  

>SPAC20G4.06c |adf1|cof1|cofilin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 137

 Score = 78.2 bits (184), Expect = 1e-15
 Identities = 43/115 (37%), Positives = 66/115 (57%)
 Frame = +1

Query: 130 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 309
           SGV VS  C   ++E+K  K  RYVVF + D K   V      + +++ FL DL +    
Sbjct: 4   SGVKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEK--- 60

Query: 310 ECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 474
           +CRY ++DFE+ +  +G      + K+  +SW PD A +K KM+YSSS D L+++
Sbjct: 61  DCRYAIYDFEF-NLGEGV-----RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRA 109


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 28/86 (32%), Positives = 44/86 (51%)
 Frame = +1

Query: 196 RYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQGTSEAS 375
           R  +  I +E   DV+T+ E++   E    D +K    EC  G  +  +        + S
Sbjct: 26  RAAIISISNENSFDVKTMVEKSESIES---DFKK--VRECLLGSEEPAFVL----VYDDS 76

Query: 376 KKQKLFLMSWCPDTAKVKKKMLYSSS 453
           KK  L L+S+ P+ A V++KMLY+SS
Sbjct: 77  KKNLLQLISYVPENANVRRKMLYASS 102


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 23/82 (28%), Positives = 34/82 (41%)
 Frame = +1

Query: 499 PSDRPLGSVSGGRRREAPRHRSPINSIYTRARDETEPALRHSWP*TTRGHDTTSRLVLLQ 678
           P   P  S  G RR  + R R P      R R+E    +R   P   R      RL L  
Sbjct: 190 PPAEPAESPFGKRRTNSGRFRDPARDPSDRVREEPREWVRRG-PLPPRESSERPRLNLKP 248

Query: 679 RKTNSINMIDFTGGRTSCESAR 744
           R ++++N  + T   T+  S++
Sbjct: 249 RSSSNVN-TEATPSATTTTSSK 269


>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 664

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
 Frame = +1

Query: 409 PDTAKVKKKMLY--SSSFDALKKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPINSIY 582
           PD  K  K      SS+  ++  S   +  +H    P  SV       A   R P + I 
Sbjct: 194 PDIQKQPKGFFSYPSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIP 253

Query: 583 TRARDETEPALRHS 624
            R    T+P L +S
Sbjct: 254 NRLSPSTQPLLSNS 267


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
 Frame = -1

Query: 404 HDIRKSFCFLLASDVPWHWCVYSKSNRPY-----LHSPVPPFCR 288
           HD+     +++ S   +H C  ++S  P+     LH+P+P  C+
Sbjct: 107 HDVASHPSYMVQSPTSYHACSNNQSPFPHSHHPPLHNPLPVSCQ 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,163,424
Number of Sequences: 5004
Number of extensions: 57828
Number of successful extensions: 177
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)