Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_I08
(890 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein. 102 3e-22
AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated... 102 3e-22
L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein. 73 3e-13
AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated... 73 3e-13
AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated... 73 3e-13
Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical p... 29 3.4
Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical pr... 29 3.4
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p... 29 4.5
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p... 29 4.5
Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical pr... 28 7.8
>L18963-1|AAC14457.1| 152|Caenorhabditis elegans unc-60 protein.
Length = 152
Score = 102 bits (245), Expect = 3e-22
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Frame = +1
Query: 124 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 297
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 298 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 474
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 475 LXRSS 489
L S
Sbjct: 121 LGLES 125
>AF024494-2|AAL02463.1| 152|Caenorhabditis elegans Uncoordinated
protein 60, isoform c protein.
Length = 152
Score = 102 bits (245), Expect = 3e-22
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 3/125 (2%)
Frame = +1
Query: 124 MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK- 297
MASGV V +CK Y+ + +H Y++F I +++ I VE VGE+NA Y +F+E+++K
Sbjct: 1 MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKKL 60
Query: 298 -GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKS 474
ECRY D E T Q QG S K+ + +CPD A V+++MLY+SS ALK S
Sbjct: 61 VEDGKECRYAAVDVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKAS 120
Query: 475 LXRSS 489
L S
Sbjct: 121 LGLES 125
>L18963-2|AAC14458.1| 165|Caenorhabditis elegans unc-60 protein.
Length = 165
Score = 72.9 bits (171), Expect = 3e-13
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 17/135 (12%)
Frame = +1
Query: 124 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 261
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 262 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 432
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 433 KMLYSSSFDALKKSL 477
KM+Y+SS A+K SL
Sbjct: 119 KMVYASSAAAIKTSL 133
>AF024494-3|AAL02461.1| 165|Caenorhabditis elegans Uncoordinated
protein 60, isoform a protein.
Length = 165
Score = 72.9 bits (171), Expect = 3e-13
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 17/135 (12%)
Frame = +1
Query: 124 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 261
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 262 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 432
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 433 KMLYSSSFDALKKSL 477
KM+Y+SS A+K SL
Sbjct: 119 KMVYASSAAAIKTSL 133
>AF024494-1|AAL02462.2| 212|Caenorhabditis elegans Uncoordinated
protein 60, isoform b protein.
Length = 212
Score = 72.9 bits (171), Expect = 3e-13
Identities = 45/135 (33%), Positives = 77/135 (57%), Gaps = 17/135 (12%)
Frame = +1
Query: 124 MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVETVGERN------------- 261
M+SGV V +T+++++ + +K +RY++F I DE ++ VE ++
Sbjct: 1 MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVEAAVTQDQLGITGDDYDDSS 59
Query: 262 -AEYEQFLEDLQK--GGTGECRYGLFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKK 432
A +++F+ED++ +CRY +FDF++T G SK K+ + CPD A +KK
Sbjct: 60 KAAFDKFVEDVKSRTDNLTDCRYAVFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKK 118
Query: 433 KMLYSSSFDALKKSL 477
KM+Y+SS A+K SL
Sbjct: 119 KMVYASSAAAIKTSL 133
Score = 38.7 bits (86), Expect = 0.006
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = +1
Query: 349 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLXRSS 489
Q SE S K+ L++ CPD A V+++MLY+SS ALK SL S
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASLGLES 185
>Z48717-10|CAA88612.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 338 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 237
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>Z48584-9|CAA88478.2| 423|Caenorhabditis elegans Hypothetical
protein ZK1321.4 protein.
Length = 423
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -1
Query: 338 SKSNRPYLHSPVPPFCRSSRNCSYSALRSPTVST 237
S N P HSP PPF S N SY+ ++ T +T
Sbjct: 188 SHHNIPIRHSPAPPFTTS--NSSYNNIKKSTDNT 219
>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
protein F52C9.1a protein.
Length = 1336
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 391 FLMSWCPDTAKVKKKMLYSSSFDALKKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPI 570
FL S+C D A + + SSS + S+ S + LG +S G R + SP+
Sbjct: 1000 FLSSFCDDPAFLIPFVSNSSSSSSPPASIAHSPPSAFTAYSLGGMSSGNRLFSLSASSPV 1059
Query: 571 NSI 579
NS+
Sbjct: 1060 NSV 1062
>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
protein F52C9.1b protein.
Length = 1331
Score = 29.1 bits (62), Expect = 4.5
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +1
Query: 391 FLMSWCPDTAKVKKKMLYSSSFDALKKSLXRSSEVHPSDRPLGSVSGGRRREAPRHRSPI 570
FL S+C D A + + SSS + S+ S + LG +S G R + SP+
Sbjct: 1000 FLSSFCDDPAFLIPFVSNSSSSSSPPASIAHSPPSAFTAYSLGGMSSGNRLFSLSASSPV 1059
Query: 571 NSI 579
NS+
Sbjct: 1060 NSV 1062
>Z81115-4|CAB03294.2| 651|Caenorhabditis elegans Hypothetical
protein T05D4.4 protein.
Length = 651
Score = 28.3 bits (60), Expect = 7.8
Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Frame = +1
Query: 178 KKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGECRYGLFDFEYTHQCQ 357
K+D+ V +R ++ + G+ +E + E+ Q C F+ +++ C
Sbjct: 58 KRDEGRSSVDSDLRQKEDNGDDNGGDEESEGKP--ENFQGSANDYC--DKFEQHFSYFCV 113
Query: 358 GTSEASKKQKLFLMSWCPD--TAKVKKKMLYSSSFDALKKSLXRSSEVHPSDRPLGSVSG 531
G ++ + K + +CP TA K + S S + + E+ + RPL S S
Sbjct: 114 GETDQTDKNAYVIKKFCPSYKTACKHKAVTTSVSLTSWPTD-PFAKEITVASRPLPSTS- 171
Query: 532 GRRREAPRHRSPINSIYTRARDETEPALRHSWP 630
GR + R S +S + LR +P
Sbjct: 172 GRTSHSRRRDSDEDSDSAEDEEVYYAELRKRYP 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,020,480
Number of Sequences: 27780
Number of extensions: 351670
Number of successful extensions: 1140
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2255353870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -