Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I08
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            24   1.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.7  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   8.6  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -3

Query: 888 PGVKWLLEAIDIYQHK 841
           P + WL + I++Y HK
Sbjct: 52  PEITWLKDGIELYHHK 67


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 881 LSGYWKL*TFTNINVP 834
           LS YWK  T+  INVP
Sbjct: 192 LSDYWKSGTWDIINVP 207


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 362 VPWHWCVYSKSNRPYLH 312
           +P HW VY + N P LH
Sbjct: 33  IPEHWLVYPEPN-PSLH 48


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 473 PLXGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTH 586
           PL  +  + +  DLS + +  +EE      R   AF+H
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSH 477


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = +2

Query: 473 PLXGVQKYIQATDLSEASQEAVEEKLRATDRQ*TAFTH 586
           PL  +  + +  DLS + +  +EE      R   AF+H
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSH 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,681
Number of Sequences: 438
Number of extensions: 4609
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)