Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I06
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.29 
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.52 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    30   0.52 
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p...    28   1.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.7  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    27   2.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.6  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   6.3  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   6.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   8.4  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +3

Query: 828 PPPPXPXPXPAPXLSPPXRXPAPP 899
           PP   P P P P   PP + P PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPP 28



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 828 PPPPXPXPXPAPXLSPPXRXPAPP 899
           PPPP P P   P   PP   P PP
Sbjct: 9   PPPPPPPPGFEPPSQPP--PPPPP 30


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 17/39 (43%), Positives = 17/39 (43%)
 Frame = -1

Query: 899 GGGXGAXWGGEXXGGXGXRXGGGGGGGXXXLCXXGGRXG 783
           GGG G   GG   G  G R G GG  G       GGR G
Sbjct: 29  GGGRGGARGGGRGGARGGRGGRGGARGGRG-GSSGGRGG 66



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 875 GGEXXGGXGXRXGGGGGGGXXXLCXXGGRXG 783
           GG   G  G   G GG GG       GGR G
Sbjct: 12  GGSRGGRGGFNGGRGGFGGGRGGARGGGRGG 42



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 896 GGXGAXWGGEXXGGXGXRXGGGGGGGXXXLCXXGGRXG 783
           GG G   GG    G G R G  GGG        GGR G
Sbjct: 16  GGRGGFNGGRGGFGGG-RGGARGGGRGGARGGRGGRGG 52


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 831 PPPXPXPXPAPXLSPPXRXPAPP 899
           P P P P PAP +  P   P PP
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 27.5 bits (58), Expect = 2.7
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = +3

Query: 828 PPPPXPXPXPAPXLSPPXRXPAPP 899
           PPPP P P  A    PP   P PP
Sbjct: 761 PPPPPPPPGVA-GAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 831 PPPXPXPXPAPXLSPPXRXPAPP 899
           P P P P P P  +P    P PP
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPP 764


>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
           protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 194

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = -1

Query: 896 GGXGAXWGGEXXGGXGXRXGGGGGGGXXXLCXXGGRXG 783
           GG    +GG   GG G    GG GGG       G R G
Sbjct: 148 GGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGG 185


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 899 GGGXGAXWGGEXXGGXGXRXGGGGGG 822
           GGG G   GG   GG G   GG GGG
Sbjct: 241 GGGPGGFGGG--LGGFGGGPGGFGGG 264



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/26 (53%), Positives = 14/26 (53%)
 Frame = -1

Query: 899 GGGXGAXWGGEXXGGXGXRXGGGGGG 822
           GGG G   GG   GG G   GG GGG
Sbjct: 227 GGGPGGFEGG--PGGFGGGPGGFGGG 250



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -1

Query: 896 GGXGAXWGGEXXGGXGXRXGGGGGGGXXXLCXXGGRXG 783
           GG G   GG   GG G   GG GGG        GG  G
Sbjct: 235 GGPGGFGGGP--GGFGGGLGGFGGGPGGFGGGPGGHGG 270


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/27 (48%), Positives = 13/27 (48%)
 Frame = -1

Query: 899 GGGXGAXWGGEXXGGXGXRXGGGGGGG 819
           GG  G   G    GG G R G GGG G
Sbjct: 447 GGSRGGRGGFGGRGGFGGRGGFGGGRG 473


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/23 (52%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 828  PPPPXPXPXPA-PXLSPPXRXPA 893
            PPPP   P PA P  +PP   PA
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLPA 1737


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 828 PPPPXPXPXPAPXLSPPXRXPAPP 899
           P PP P P PAP  +     PAPP
Sbjct: 3   PAPPPPPPAPAPAAA----APAPP 22



 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 831 PPPXPXPXPAPXLSPPXRXPAPP 899
           PP    P P+P  +PP    APP
Sbjct: 144 PPRPSIPPPSPASAPPIPSKAPP 166


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
 Frame = +3

Query: 831 PPPXPXPXPAPXLSP-PXRXPAP 896
           PP  P P P   LSP P R P P
Sbjct: 589 PPRVPTPVPGRTLSPKPTRIPTP 611


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 831 PPPXPXPXPAPXLSPPXRXPAP 896
           PPP P P      SPP   P P
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRP 274


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,185,249
Number of Sequences: 5004
Number of extensions: 10100
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)