Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I04
         (905 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...   212   5e-56
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...   212   5e-56
SPAC4F8.06 |||mitochondrial ribosomal protein subunit S12|Schizo...    48   2e-06
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   8.5  

>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score =  212 bits (518), Expect = 5e-56
 Identities = 97/126 (76%), Positives = 112/126 (88%)
 Frame = +2

Query: 137 REQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 316
           RE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKN
Sbjct: 18  REERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKN 77

Query: 317 GKKVTAFVPRDGCLNHIXENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 496
           GKKVTAFVP DGCLN + ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EK
Sbjct: 78  GKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEK 137

Query: 497 KERPRS 514
           KE+PR+
Sbjct: 138 KEKPRA 143



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 85  MGKPRGIRTARKHVNHR 135
           MGKP G+  ARK  NHR
Sbjct: 1   MGKPAGLNAARKLRNHR 17


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score =  212 bits (518), Expect = 5e-56
 Identities = 97/126 (76%), Positives = 112/126 (88%)
 Frame = +2

Query: 137 REQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKN 316
           RE+RWAD  +KK  +GT +K++PFGG+SHAKGIV+EK+GVEAKQPNSAIRKCVRVQLIKN
Sbjct: 18  REERWADAHYKKRLLGTAYKSSPFGGSSHAKGIVVEKIGVEAKQPNSAIRKCVRVQLIKN 77

Query: 317 GKKVTAFVPRDGCLNHIXENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEK 496
           GKKVTAFVP DGCLN + ENDEVL++GFGRKG A GDIPGVRFKVVKVA V L AL+ EK
Sbjct: 78  GKKVTAFVPHDGCLNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEK 137

Query: 497 KERPRS 514
           KE+PR+
Sbjct: 138 KEKPRA 143



 Score = 27.1 bits (57), Expect = 3.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 85  MGKPRGIRTARKHVNHR 135
           MGKP G+  ARK  NHR
Sbjct: 1   MGKPAGLNAARKLRNHR 17


>SPAC4F8.06 |||mitochondrial ribosomal protein subunit
           S12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 31/82 (37%), Positives = 48/82 (58%)
 Frame = +2

Query: 212 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXENDEVLV 391
           G+   +G+      V+ K+PNSA+RK  RV+L   G+ VTA++P  G  ++  E+  VL+
Sbjct: 47  GSPFRRGVCTRVFTVKPKKPNSAVRKVARVRL-STGRSVTAYIP--GIGHNAQEHAVVLL 103

Query: 392 AGFGRKGHAVGDIPGVRFKVVK 457
            G GR      D PGV++ VV+
Sbjct: 104 RG-GR----AQDCPGVQYHVVR 120


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 15/66 (22%), Positives = 32/66 (48%)
 Frame = +2

Query: 80  SKWVNPEEYERRVST*TTAREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVE 259
           ++W++PE Y  R S  T +   R+ D + ++    +K +     G+S ++   +  +  E
Sbjct: 51  TEWLDPELYGLRRSGRTRSNPGRYVDTDDQEDVFPSKHRKGTRNGSSFSRHRTIRDLDDE 110

Query: 260 AKQPNS 277
           A+   S
Sbjct: 111 AESVTS 116


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,580,860
Number of Sequences: 5004
Number of extensions: 53573
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)