Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_I04
(905 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0466 - 34134138-34134278,34134355-34134481,34134558-341347... 225 3e-59
01_06_1253 - 35753546-35753686,35753759-35753885,35753970-357541... 225 3e-59
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 138 4e-33
05_03_0026 + 7466017-7466034,7466340-7466405,7466572-7466833,746... 51 1e-06
12_01_0425 + 3347804-3348284,3348544-3348759,3349038-3349588,334... 29 3.8
04_01_0440 + 5746474-5746662,5746895-5747251 28 8.9
>03_06_0466 -
34134138-34134278,34134355-34134481,34134558-34134713,
34135831-34135835
Length = 142
Score = 225 bits (551), Expect = 3e-59
Identities = 102/129 (79%), Positives = 115/129 (89%)
Frame = +2
Query: 128 TTAREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 307
T R QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL
Sbjct: 15 THRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQL 73
Query: 308 IKNGKKVTAFVPRDGCLNHIXENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 487
+KNGKK+ AFVP DGCLN I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct: 74 VKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133
Query: 488 KEKKERPRS 514
KEKKE+PRS
Sbjct: 134 KEKKEKPRS 142
>01_06_1253 -
35753546-35753686,35753759-35753885,35753970-35754125,
35754761-35754853,35757132-35757265,35757339-35757465,
35757550-35757705,35758321-35758325
Length = 312
Score = 225 bits (551), Expect = 3e-59
Identities = 102/129 (79%), Positives = 115/129 (89%)
Frame = +2
Query: 128 TTAREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 307
T R QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL
Sbjct: 185 THRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQL 243
Query: 308 IKNGKKVTAFVPRDGCLNHIXENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 487
+KNGKK+ AFVP DGCLN I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct: 244 VKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 303
Query: 488 KEKKERPRS 514
KEKKE+PRS
Sbjct: 304 KEKKEKPRS 312
Score = 222 bits (542), Expect = 4e-58
Identities = 100/127 (78%), Positives = 113/127 (88%)
Frame = +2
Query: 128 TTAREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 307
T R QRWADK +KK+H+G +WK PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQL
Sbjct: 15 THRRNQRWADKAYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQL 73
Query: 308 IKNGKKVTAFVPRDGCLNHIXENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 487
+KNGKK+ AFVP DGCLN I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+
Sbjct: 74 VKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF 133
Query: 488 KEKKERP 508
KEKKE+P
Sbjct: 134 KEKKEKP 140
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 138 bits (335), Expect = 4e-33
Identities = 62/90 (68%), Positives = 71/90 (78%)
Frame = +2
Query: 128 TTAREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 307
T R QRWADK +KK+H G +WK PF G+SHAKGIVLEK+G+EAKQPNSAI KC RVQL
Sbjct: 86 THRRNQRWADKAYKKSHFGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAICKCARVQL 144
Query: 308 IKNGKKVTAFVPRDGCLNHIXENDEVLVAG 397
+KNGKK+ AFVP DGCLN I EN+ V G
Sbjct: 145 VKNGKKIAAFVPNDGCLNFIKENEVAYVDG 174
>05_03_0026 +
7466017-7466034,7466340-7466405,7466572-7466833,
7467254-7467294
Length = 128
Score = 51.2 bits (117), Expect = 1e-06
Identities = 22/27 (81%), Positives = 25/27 (92%)
Frame = +2
Query: 377 DEVLVAGFGRKGHAVGDIPGVRFKVVK 457
DEVL++GFG KGHAVGDI GVRF+VVK
Sbjct: 67 DEVLISGFGHKGHAVGDIRGVRFEVVK 93
>12_01_0425 +
3347804-3348284,3348544-3348759,3349038-3349588,
3349752-3349815,3349915-3349975,3350271-3350409,
3350561-3350677,3350794-3350971,3351218-3351828
Length = 805
Score = 29.5 bits (63), Expect = 3.8
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = -3
Query: 411 PLRPNPATSTSSFSXMWFRQPSRGTNAVTFFPFLMSCTRTHLRMAELGCLA-STPTFSRT 235
P P+T S S F P T+A + PF + + A STP F+ +
Sbjct: 277 PFAAKPSTGFGSTSTTLFNSPFNNTSAASSSPFASTTSIPLFTQTSSSLFANSTPGFASS 336
Query: 234 MPF 226
PF
Sbjct: 337 SPF 339
>04_01_0440 + 5746474-5746662,5746895-5747251
Length = 181
Score = 28.3 bits (60), Expect = 8.9
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 145 AMGGQRIQESPHGYEMEG*PFRWCI-SRKGHRPR 243
A+GG P GY+ +G PF C KG+ PR
Sbjct: 126 AIGGMPAIAVPAGYDNQGVPFAICFGGLKGYEPR 159
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,619,901
Number of Sequences: 37544
Number of extensions: 392074
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2565528060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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