Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I04
         (905 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical pr...   238   3e-63
Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical pr...    50   3e-06
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    28   8.0  

>Z70684-7|CAA94601.1|  143|Caenorhabditis elegans Hypothetical
           protein F28D1.7 protein.
          Length = 143

 Score =  238 bits (583), Expect = 3e-63
 Identities = 107/129 (82%), Positives = 119/129 (92%)
 Frame = +2

Query: 128 TTAREQRWADKEFKKAHMGTKWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQL 307
           T  +EQRW DK +KKAH+GT+WK+NPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRVQL
Sbjct: 15  THRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQL 74

Query: 308 IKNGKKVTAFVPRDGCLNHIXENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALY 487
           IKNGKK+TAFVP DGCLN + ENDEVLV+GFGR GHAVGDIPGVRFK+VKVAN SL+AL+
Sbjct: 75  IKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALF 134

Query: 488 KEKKERPRS 514
           K KKERPRS
Sbjct: 135 KGKKERPRS 143



 Score = 31.5 bits (68), Expect = 0.86
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = +1

Query: 85  MGKPRGIRTARKHVNHRS*TAMGGQRIQESPHGYEMEG*PFRWCISRKG 231
           MGKP+G+ TARK   HR       +R +++  G   +  PF      KG
Sbjct: 1   MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKG 49


>Z92838-1|CAB07406.1|  157|Caenorhabditis elegans Hypothetical
           protein T03D8.2 protein.
          Length = 157

 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 30/66 (45%), Positives = 42/66 (63%)
 Frame = +2

Query: 212 GASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIXENDEVLV 391
           G SH KGIVL+ V    K+PNS  RKC  V+L   G +V A++P  G  +++ E+ +VLV
Sbjct: 72  GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128

Query: 392 AGFGRK 409
            G GR+
Sbjct: 129 KG-GRR 133


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -3

Query: 147 RCSRAVVHVLTRRS--YSSGFTHLDSTTPIGYGWE 49
           R + AVV V T+ +  +++G+T L  TT   YGW+
Sbjct: 169 RGTHAVVGVATKNAPLHAAGYTALIGTTDESYGWD 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,496,990
Number of Sequences: 27780
Number of extensions: 311657
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 691
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2307803960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)