Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_I03
         (875 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    27   2.7  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.5  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    27   4.6  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   4.6  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    27   4.6  
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    26   8.1  
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo...    26   8.1  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   8.1  

>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 749 NLQPGQLVSDFTVTIDIRESNKITELRVPEIXTGNEIDATN 871
           N +  QLVS+FT T DI    + T++  P +    E+  TN
Sbjct: 94  NERSSQLVSEFTTTEDIENCEETTQVLPPRLVV-YELRLTN 133


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
 Frame = +1

Query: 304 CGN*SNARCRYSNGGTCSTNKTDEDGCEVRDIYAI---RSHGYCSACAKCCKQISRSQL* 474
           CG+    +C   + GTCS   T    C   ++        +G+   C + C  +      
Sbjct: 485 CGHRCKYKCHLGSCGTCSETLTIPCRCTANEVQVTCEQLQNGFIPTCERLCTILLS---- 540

Query: 475 GVTPRHSFHQRICYDSGWKILQSVRQRKERG 567
               RH  +++ C  SG+   Q+   R+ +G
Sbjct: 541 --CGRHQCNKKCC--SGYSKAQTRLARRPKG 567


>SPCC63.04 |mok14||alpha-1,3-glucan synthase
           Mok14|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1369

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
 Frame = +3

Query: 591 YHKELVPHTSLPEHVTRTISLYP*TWR-LSPKPHSI*HTKSCWSIGTVFTIMQSICNQGN 767
           YH  L P  +LPE +   ISL+   ++ L P   SI   + C       TI +     GN
Sbjct: 392 YHGALAPIYNLPEVIPCAISLHNAEFQGLWPLQSSIDEREVCGLFNVSKTICREYIQFGN 451

Query: 768 WFPISLSPLTFGSRTKS 818
            F +    +++  R +S
Sbjct: 452 AFNLMHCGVSYVRRHQS 468


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +1

Query: 319 NARCRYSNGGTCSTNKTDEDGCEVRDIYAI 408
           NA      GGTC   + + D C+  D Y +
Sbjct: 64  NATILVDTGGTCECTEANRDDCDKLDDYVL 93


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 409 VSHRYHGLHIHLRQFYWLNRSLRY 338
           + HRY   H  LRQFY    +LRY
Sbjct: 221 LKHRYKSQHHRLRQFYADCSNLRY 244


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 254 AATITTPETMVVSRSDDAETEATLDVD 334
           A T+T P T + S  +DAE++A L  D
Sbjct: 23  AGTVTKPVTKMSSYIEDAESDAELPQD 49


>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
           Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 415 HGYCSACAKCCKQISRSQ 468
           H YC +CAK  K   RSQ
Sbjct: 214 HVYCGSCAKVLKTSKRSQ 231


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +2

Query: 704 EELLEYRNGVYNHAVNLQPGQLVSDFTVTIDIRESNKITELRVPEIXTGNE 856
           EE +E ++  +NH VNL  G      TV  +   +++I +   PE+    E
Sbjct: 202 EEFVEPKDSQFNHDVNLMQGSAPGYSTVEPEDNFASEI-QTNAPEVHLNYE 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,920
Number of Sequences: 5004
Number of extensions: 73194
Number of successful extensions: 188
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 438479610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)