Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_H24
         (997 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0192 - 16204575-16204582,16204798-16204966,16205708-162057...    30   3.3  
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866...    29   7.6  
01_06_1670 - 39007402-39008229,39008320-39008567,39009159-390093...    29   7.6  

>02_03_0192 -
           16204575-16204582,16204798-16204966,16205708-16205785,
           16206442-16206567,16206723-16206968,16207368-16207487,
           16207947-16208198,16208441-16208517,16208581-16208680,
           16210071-16210511
          Length = 538

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 196 HPSSCGTAWVTHAACPLLLVPSKYS*RRTYL 288
           HP  CG A    A CPL L+P +   R  +L
Sbjct: 5   HPPPCGVAPAAAATCPLFLLPRRSLSRSLHL 35


>09_06_0277 -
           21983049-21983080,21983250-21984788,21986619-21986655,
           21987612-21987665,21987781-21987893,21988272-21988660,
           21988783-21988903,21989245-21989342,21989963-21990153
          Length = 857

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 14/50 (28%), Positives = 18/50 (36%)
 Frame = +2

Query: 473 YXDVVIXLPQTHTHGVPSXPSPPQRIYGHTLIXPALXXPTXVXXXXXPPP 622
           Y    I  P       P+ P PP  +    L+ P +  PT       PPP
Sbjct: 359 YYSTPILPPYGDAFSPPNPPPPPPPMSPSCLLPPIIPAPTFTYSSPPPPP 408


>01_06_1670 -
           39007402-39008229,39008320-39008567,39009159-39009364,
           39009454-39011054
          Length = 960

 Score = 28.7 bits (61), Expect = 7.6
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = +2

Query: 497 PQTHTHGVPSXPSPP 541
           P THTHG P  P PP
Sbjct: 415 PPTHTHGPPPPPPPP 429


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,531,978
Number of Sequences: 37544
Number of extensions: 300990
Number of successful extensions: 954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2916970260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)