Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_H22
         (915 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    28   2.1  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    27   2.8  
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy...    27   2.8  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    27   3.7  
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch...    26   8.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   8.6  

>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 127 CVLNSASRCHVFCLSSCRC 183
           CVL    RCH+ CLS  +C
Sbjct: 496 CVLLGEIRCHIGCLSCTKC 514


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 414 GFNSKQLDSWLKYWAEEYPFA-ERQKFLNQYPHFKTNIQGLNIHFMRITPKVPKDVEIVP 590
           G  S+QL S++  +A       E +K  N Y +FK N+  L+++  ++  +V  D     
Sbjct: 366 GIVSRQLLSFIAPFAPTPESKQELEKLGNDYDYFKKNVVDLHLNLAQVLRRVSPDAPFTK 425

Query: 591 L 593
           L
Sbjct: 426 L 426


>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 874

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 435 DSWLKYWAEEYPFAERQKFLNQY 503
           ++W  YW   YPF +  K   +Y
Sbjct: 39  ENWKSYWKSHYPFVKNDKGKKKY 61


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 3/47 (6%)
 Frame = +1

Query: 361 SRNEDLSPLHWRVLASNTGSIR--NNWTVGSNI-GQKNTHSLKGRSS 492
           S +E+L+P   + LASNT  ++  N+ +  S+I G + T++L G+S+
Sbjct: 197 STSENLTPTSSKSLASNTSLVQSFNSASRSSSISGNQYTYNLLGKST 243


>SPAP8A3.14c |||mitochondrial inner membrane protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 677

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +2

Query: 302 HQTLRDHFQ*DDGKRTKRTNQETKTFRPSIGGCWLQIRVQFETIGQLAQI 451
           H TL D FQ  +  + K  N   K+FR  +    L++  + E + + A++
Sbjct: 86  HNTLEDVFQDIESYKPKSVNTSAKSFRQLVN--TLEVAFRKEQLRKFAKV 133


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -2

Query: 539 NIQTLDISLEMRILVKELLPF-SEWVFFCPIFEPTVQ 432
           N+QTLD+SL    L+K+   + +++  +    EPT+Q
Sbjct: 98  NLQTLDLSLAEFSLIKDAQNYLNKYASYFQAHEPTLQ 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,546,815
Number of Sequences: 5004
Number of extensions: 71328
Number of successful extensions: 213
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)