Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_H19
         (872 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    24   2.1  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   6.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
 Frame = +3

Query: 354 PDKYFSFTNVELPVKYNSKFMNSIWGKYNRYSPHNVKKVND-----------AFVSSGDF 500
           PD +    N  LP   ++   NS  G +++     VKK  D           +  ++G+ 
Sbjct: 664 PDSFIEAPNKTLPSLPSTLTKNSKQGLFSKLFAKKVKKDKDIILNVPKESTQSLTTTGNV 723

Query: 501 QQLPVNSSKNEPMITLPSPKL 563
             L  N++ N   + +P   L
Sbjct: 724 SYLTTNNTSNNSQLQIPRASL 744


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 399 YNSKFMNSIWGKYNRYSPHNVKKVNDAFVSSGDFQQLPV 515
           YN+   N+ +  YN  + +N KK+   + +  + +Q+PV
Sbjct: 329 YNNNNYNNNYNNYNNNNYNNYKKL---YYNIINIEQIPV 364


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 6.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 348 KKPDKYFSFTNVELPVKYNSK 410
           KKP + F F  +   VK+ SK
Sbjct: 438 KKPRRKFHFKQIARAVKFTSK 458


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,535
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28280841
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)