Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_H18
         (870 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.018
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 30.7 bits (66), Expect = 0.018
 Identities = 15/41 (36%), Positives = 16/41 (39%)
 Frame = +3

Query: 696 PPXXAXPHXXYPXXPPPXAPPXPXPPPXXXXPPRAPPXXGP 818
           P     PH   P  P   +PP P   P    PP APP   P
Sbjct: 21  PGPQPSPHQS-PQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/31 (32%), Positives = 11/31 (35%)
 Frame = +3

Query: 762 PXPPPXXXXPPRAPPXXGPGXAXSLXPPSXP 854
           P P P     P+AP    P       PP  P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGP 51



 Score = 22.2 bits (45), Expect = 6.4
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +3

Query: 744 PXAPPXPXPPPXXXXPPRAPPXXGPGXAXSLXPPS 848
           P AP    PP     P + PP  GP  A     PS
Sbjct: 31  PQAPQRGSPP----NPSQGPPPGGPPGAPPSQNPS 61


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 754  PPXPPPPP 777
            PP PPPPP
Sbjct: 1355 PPPPPPPP 1362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,195
Number of Sequences: 438
Number of extensions: 6044
Number of successful extensions: 20
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)