Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_H12
(938 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical p... 32 0.51
Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical pr... 32 0.51
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.7
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 2.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 2.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 2.7
Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 29 3.6
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 29 3.6
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 29 6.3
AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical ... 29 6.3
AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical ... 29 6.3
AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical ... 29 6.3
AC006714-19|AAK39597.1| 218|Caenorhabditis elegans F-box a prot... 29 6.3
AC006714-15|AAK39600.1| 251|Caenorhabditis elegans F-box a prot... 29 6.3
>Z70205-10|CAA94122.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 32.3 bits (70), Expect = 0.51
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 643 TXPXPTPXPXRYPSIAXSNXPTLTKLCPNXXXSXPTPSTXLRXPPXAPT 789
T P P+P P + P A T+TK+ P + P P T P + T
Sbjct: 131 TGPTPSPVPSKAPISAAKLPGTVTKVAPLLSAAQPPPKTLAPAPGASET 179
>Z68003-5|CAA91979.2| 887|Caenorhabditis elegans Hypothetical
protein E02H4.3a protein.
Length = 887
Score = 32.3 bits (70), Expect = 0.51
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 643 TXPXPTPXPXRYPSIAXSNXPTLTKLCPNXXXSXPTPSTXLRXPPXAPT 789
T P P+P P + P A T+TK+ P + P P T P + T
Sbjct: 131 TGPTPSPVPSKAPISAAKLPGTVTKVAPLLSAAQPPPKTLAPAPGASET 179
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 70 GGCGGGGGGCGGGGGCGGGGGGCGGGGGG 98
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 161 GGCGGGGGGCGGGGGGGCGGGGGGGCGGG 189
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 139 GGCGGGGGGGCGGGGGGCGGGGGGCGGGG 167
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 88 GGCGGGGGGCGGGGGCGGGGGGCGGGGGG 116
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCGGG 150
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 95 GGCGGGGGCGGGGGGCGGGGGGCGGGGGG 123
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 88 GGCGGGGGGCGGGGGCGGGGGGCGGGGGG 116
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 122 GGCGGGGGGCGGGGGGGCGGGSSGGCGGG 150
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/29 (44%), Positives = 13/29 (44%)
Frame = -3
Query: 825 GXCGXGGXXVXAGGGXGXGA*XXGXXXGG 739
G CG GG GGG G G G GG
Sbjct: 95 GGCGGGGGCGGGGGGCGGGGGGCGGGGGG 123
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 341 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 490
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 160 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 209
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 341 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 490
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 181 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 230
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +2
Query: 341 QAYGTRVLGP-GGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGSG 490
Q +G G GG+ N GG +N Q T + N GG G+TASG G
Sbjct: 166 QGFGNNQQGGFGGNQGNQGGFGGQNGQNGQNTGN-NGGFGGNQGVTASGFG 215
>Z69383-1|CAA93412.1| 409|Caenorhabditis elegans Hypothetical
protein F13E9.4 protein.
Length = 409
Score = 29.5 bits (63), Expect = 3.6
Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 2/116 (1%)
Frame = +2
Query: 146 GPSDYAEDYSISGQSSRRHPRDVTWDKQMGGGKVFGTLGQNDDGLFG--KAGYNREIFND 319
G + +S GQ S + + +T + G GQN + G + GY
Sbjct: 32 GYGQQQQGFSGFGQGSATNRQGMTGQGLLESSYQQG-YGQNQGSMQGYSQQGYGGNS-QQ 89
Query: 320 DRGKLTGQAYGTRVLGPGGDSTNYGGRLDWANKNAQATIDLNRQIGGRSGMTASGS 487
D G Q G V G GG S +YG + + Q N G SG ASGS
Sbjct: 90 DYGYSQSQGSGMGVQGYGGSSQSYGQQAFAQQQRPQQGFQSN----GFSGQQASGS 141
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 713 PNYVLTXXXPPXXXPXXYAPXPXPPPAXTXXPP 811
P +T PP + P P PPP T PP
Sbjct: 279 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 311
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 713 PNYVLTXXXPPXXXPXXYAPXPXPPPAXTXXPP 811
P +T PP + P P PPP T PP
Sbjct: 289 PTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPP 321
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/52 (30%), Positives = 17/52 (32%)
Frame = +1
Query: 634 CPXTXPXPTPXPXRYPSIAXSNXPTLTKLCPNXXXSXPTPSTXLRXPPXAPT 789
CP P P P P S P CP P P+ PP PT
Sbjct: 81 CPYVPPAPLPPPPPPASPCCGPSPVPAPCCP----PPPAPAAPCCPPPPPPT 128
>AF078789-1|AAK21515.1| 392|Caenorhabditis elegans Hypothetical
protein Y44E3B.2 protein.
Length = 392
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 279 SPSSFCPKVPKTLPPPICLSQVTSRG-CR-LEDCPL 178
SP FC P PP C+S+V G CR ED P+
Sbjct: 321 SPYLFCYIPPNNEHPPSCVSKVRRNGVCRGFEDYPI 356
>AF039720-9|AAK68360.2| 676|Caenorhabditis elegans Hypothetical
protein F33D11.9b protein.
Length = 676
Score = 28.7 bits (61), Expect = 6.3
Identities = 15/57 (26%), Positives = 29/57 (50%)
Frame = -1
Query: 305 LCCNQLFQRVHHRFVPKCQRPCLPPFVCPK*RHEGVALRIAR*SSNLPRNQKVRKLL 135
L LF V+ + +P V PK G+A+++ R S+LP+++ ++L+
Sbjct: 53 LSAQWLFDPVNMEVTRISEHSLMPGLVTPKFDKSGIAIQLYRRFSDLPKSKSQQELI 109
>AF000193-3|AAB52890.1| 259|Caenorhabditis elegans Hypothetical
protein T20B6.3 protein.
Length = 259
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/55 (34%), Positives = 23/55 (41%)
Frame = +2
Query: 233 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTRVLGPGGDSTNYGG 397
GGG G G DG +G G+ G + G YG +G GG YGG
Sbjct: 167 GGGMGGGGYGGGGDGGYGGGGFGGGGMGGYGGGMGGGGYGGGGMGGGG----YGG 217
>AC006714-19|AAK39597.1| 218|Caenorhabditis elegans F-box a protein
protein 92 protein.
Length = 218
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = -2
Query: 187 LPADRVIFRVIRRSVNFCVNTHQSCSEDIKQICIHFELYQVSLLKTECQNLKEFPIVNG 11
LP DR++ R + R+ ++ H C ++++ ++ + QV L+ + K + G
Sbjct: 20 LPVDRLVVRKVTRNFRIAIDHHGIC---LEELVVNMDKLQVLELRVDGTYFKYIDVTGG 75
>AC006714-15|AAK39600.1| 251|Caenorhabditis elegans F-box a protein
protein 91 protein.
Length = 251
Score = 28.7 bits (61), Expect = 6.3
Identities = 13/59 (22%), Positives = 29/59 (49%)
Frame = -2
Query: 187 LPADRVIFRVIRRSVNFCVNTHQSCSEDIKQICIHFELYQVSLLKTECQNLKEFPIVNG 11
LP DR++ R + R+ ++ H C ++++ ++ + QV L+ + K + G
Sbjct: 20 LPVDRLVVRKVTRNFRIAIDHHGIC---LEELVVNMDKLQVLELRVDGTYFKYIDVTGG 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,218,252
Number of Sequences: 27780
Number of extensions: 340958
Number of successful extensions: 1438
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2423194158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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