Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_H11
         (928 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    79   9e-16
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    31   0.17 
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    30   0.53 
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    28   1.6  
SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    28   2.1  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    27   2.8  
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    27   2.8  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   3.8  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    27   5.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    26   6.6  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   8.7  

>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 79.0 bits (186), Expect = 9e-16
 Identities = 41/97 (42%), Positives = 56/97 (57%)
 Frame = +2

Query: 584 HTWSFMGVNPNNVPEQPYDLFFGKWISEGQRDLIRFHSLKKRKFIGNTSMDAQLXIVMAN 763
           H ++ +    NNV E P  ++FG W   G RD I    LK+R +IG TS DA+L +V A 
Sbjct: 174 HVFTVLENRRNNV-EGP-KVYFGHWCGSGSRDAIDTFDLKQRSYIGITSFDAELSLVTAQ 231

Query: 764 QXPIAPRHIVIDPFVGSGSWLIAXAHFGXYVWGSXID 874
               AP  ++ DPFVG+GS+L   + FG +  GS ID
Sbjct: 232 MAMAAPGKLIYDPFVGTGSFLYTCSFFGAHTLGSDID 268



 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 32/128 (25%), Positives = 57/128 (44%)
 Frame = +1

Query: 211 EKPYWIVELPSEDCAKKIASRSVLMKNCIELWSRAKSIDQLHINLRKSLQNTTSKWIFEN 390
           + P+ +  + S + A++   RS+  K   E++    S  +LH    K  +   + W    
Sbjct: 74  QNPFMLAVVNSNEDARRWIRRSIFCKGIYEIYCIGDSFTRLH---EKMKELNPAPW---- 126

Query: 391 VECAEHICPKELIDVCCSPNSSFKIEVETFCKHFSIQEKLDKIEEFTYLPLKGSVKLKNP 570
            +  +H             NSS+K   ETF    +++E+L  I +F Y+ L+G V + NP
Sbjct: 127 -DSFKH-------------NSSYKFTFETFGTRRTMKEQLSIISDFEYMQLQGPVSMHNP 172

Query: 571 DITLSYLE 594
               + LE
Sbjct: 173 QHVFTVLE 180


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 272 REAIFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKSTCS*ANHNKY 102
           RE I +A SS+ +    Y FS+  +   +  +LN+ KI ++ ACL   C   N ++Y
Sbjct: 752 REGIIYATSSDDT----YTFSRSIYVKAMRDLLNEAKIQIMHACLIDVCL-KNRDRY 803


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 29.9 bits (64), Expect = 0.53
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
 Frame = +1

Query: 145 AEINSILSLFKIPIKFIEKPCLEKPYWIVELPSEDCAKKIASRSVLMKNCIELWSRAKS- 321
           A + S  SL K+  K I    +++    V    E  A +++S   LM     +W+   S 
Sbjct: 22  ATLGSKHSLRKLHKKDIMSVDIDEACDFVAFSPEPLALRLSSN--LMIGVTRVWAHQYSF 79

Query: 322 ----IDQLHINLRKSLQNTTSKWIFENVECA-EHICPKELI 429
               +  LH+ +RK L + TSK  F+N++   E   PK+L+
Sbjct: 80  FHSQVSTLHLRVRKELDHFTSK-PFKNIDIQNEQTNPKQLL 119


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 250  CAKKIASRSVLMKNCIELWSRAKSIDQLHINLRKSLQNTTSK 375
            C  +     VL+  C  +W     +D+L+ +L+  LQN   K
Sbjct: 2257 CLSESDENDVLISRCCTMWLSNSHLDELNNSLQHYLQNLPCK 2298


>SPBC1198.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +2

Query: 305 GQELKVLTNYILIYANHFKIPPLNGFSKMWN 397
           G    V++ Y+  Y +  K P + GF +MWN
Sbjct: 150 GLSAYVISYYVEKYVDKAKFPIIKGFIEMWN 180


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 521 SILSSFSWIEKCLQNVSTSILNELLGEQHTSINSL 417
           +++ SF W E   +++   + + LLG  HT  N+L
Sbjct: 28  ALMYSFLWSESAKKSLLNEVFSALLGYDHTLWNTL 62


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 385 ENVECAEHICPKELIDVCCSPNSSFKIEVETFCKH 489
           E V  AE    +E+ + CC   S F+ E+E++ +H
Sbjct: 204 ELVSSAEKEIVREIKEKCCYVASDFRSEIESWTEH 238


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 149 KSIVFCPYSKYPSNSLRNRVWRSRIGL*SSLQRIVRKRSP 268
           KSI+ C ++ +    LR+ +WR    L S  +RI   ++P
Sbjct: 207 KSIICCLFTPFSYAILRSYIWRFAALLTSCCRRIAYTKTP 246


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 263 IFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLISACLKST 129
           +F   + E  S+I + FSKH F ++ + I+N  K  ++S  L  T
Sbjct: 486 VFSTSAQELMSSIIFLFSKHPFDISDVVIVNNIKYEVVSLSLLFT 530


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1036

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -3

Query: 278  TDREAIFFAQSSEGSSTIQYGFSKHGFSMNLMGILNKDKILLIS 147
            T     + + SS  SST     SK   SM L G++    ILL++
Sbjct: 993  TSSSTSYTSSSSSSSSTTSAASSKASVSMGLNGLMIAAVILLVA 1036


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +1

Query: 223 WIVELPS-EDCAKKIASRSVLMKNCIELWSRAKSI 324
           W V L + E+C+K  +  +    NC ELW+    +
Sbjct: 23  WKVRLSAYEECSKSFSLSADGSDNCFELWNNQSEL 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,753,806
Number of Sequences: 5004
Number of extensions: 82773
Number of successful extensions: 243
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)