Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_H11
(928 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 77 2e-14
09_04_0223 - 15837275-15838279 29 4.0
04_04_0894 + 29160537-29160628,29161368-29162198,29162356-291626... 29 4.0
07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570 29 5.2
08_02_0464 - 17463066-17465136,17470821-17471650 29 6.9
08_02_0181 + 13923658-13923661,13925518-13925681,13925879-139259... 29 6.9
07_03_1746 - 29184422-29184552,29184848-29184980,29185182-291852... 29 6.9
03_05_0092 - 20714102-20717902 29 6.9
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 28 9.2
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 77.0 bits (181), Expect = 2e-14
Identities = 37/82 (45%), Positives = 50/82 (60%)
Frame = +2
Query: 602 GVNPNNVPEQPYDLFFGKWISEGQRDLIRFHSLKKRKFIGNTSMDAQLXIVMANQXPIAP 781
G N P +FFG+ + R L+ + LK RK+IG T+MDA++ +MANQ P
Sbjct: 180 GCNNGLPPVAQRTVFFGREVGAADRHLLPTYQLKSRKYIGPTAMDAEMAFLMANQGLARP 239
Query: 782 RHIVIDPFVGSGSWLIAXAHFG 847
+V DPFVG+GS L+A AHFG
Sbjct: 240 GKLVYDPFVGTGSILVAAAHFG 261
Score = 64.9 bits (151), Expect = 9e-11
Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 11/172 (6%)
Frame = +1
Query: 91 MWRRYLLWFAHEHVDFRHAEINSILSLFKIP-------IKFIEKPCLEKPYWIVELPSED 249
MW YL F H +D+R E+ S+ LF P + E ++ P+ +V LP ++
Sbjct: 1 MW--YLCVFYHRLLDYRRPEVQSLAELFGGPGAGDAVEWRMPENHHVDSPFHLVRLPGDE 58
Query: 250 -CAKKIASRSVLMK--NCIELWSRAKSIDQLHINLRKSLQNTTSKWI-FENVECAEHICP 417
A +IA+RS I S AK + L L K + + +E +E P
Sbjct: 59 RLAAQIANRSKSASPDRLIHHHSLAKLL--LAGLLVKGIYELWGQGTTYEELERVVMAYP 116
Query: 418 KELIDVCCSPNSSFKIEVETFCKHFSIQEKLDKIEEFTYLPLKGSVKLKNPD 573
+E +P S+FKI V++F K S QE+ D ++ TY+P KG V LK PD
Sbjct: 117 EERKLPYLTPESTFKIVVDSFGKVISFQEQNDIMKSLTYIPFKGRVNLKKPD 168
>09_04_0223 - 15837275-15838279
Length = 334
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 632 PYDLFFGKWISEGQRDLIRFHSLKKRKFIGNTSMD 736
P DL GKW++ G+R R+ SL+ R + N MD
Sbjct: 261 PEDLLVGKWLNIGRRGKNRY-SLRPRMYDLNWDMD 294
>04_04_0894 +
29160537-29160628,29161368-29162198,29162356-29162615,
29163064-29163164,29163261-29163353,29163926-29164033,
29165074-29165301,29165733-29165837
Length = 605
Score = 29.5 bits (63), Expect = 4.0
Identities = 16/62 (25%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = -3
Query: 590 RYDNVISGFFNLTDPFSGKYVNSSILSSFSWIEKCLQNVSTSILNELLG-EQHTSINSLG 414
R + ++G N+ + G V+S +S W C ++ +TSILN++ ++++ +N +
Sbjct: 59 RRSSRVTGSQNIMEICLGPCVSSG--ASSRWFSSCTKHSNTSILNQIKAVDRYSPVNGMS 116
Query: 413 QI 408
I
Sbjct: 117 MI 118
>07_03_0868 - 22157711-22157937,22158112-22158758,22158918-22159570
Length = 508
Score = 29.1 bits (62), Expect = 5.2
Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 1/83 (1%)
Frame = +1
Query: 283 MKNCIELWSRAKSI-DQLHINLRKSLQNTTSKWIFENVECAEHICPKELIDVCCSPNSSF 459
+K+ LWS + + H+ KS + T W + + E + + V P + +
Sbjct: 279 LKHQTHLWSLLAQLKSREHLAQCKSCKQTNGHWKYYDGNLFEEQILQTDLQVDTYPENDY 338
Query: 460 KIEVETFCKHFSIQEKLDKIEEF 528
+ E + F +HF EE+
Sbjct: 339 QAEEDEFGRHFDTDSNYYDAEEY 361
>08_02_0464 - 17463066-17465136,17470821-17471650
Length = 966
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = +1
Query: 157 SILSLFKIPIKFIEK----PCLEKPYWIVELPSEDCAKKIASRSVLMKNCIELW 306
SILS IP+ F+ PCL + +W+ + C K IA L + +++W
Sbjct: 732 SILSARPIPVDFLASLSPPPCLLQRFWMWNSYFQRCPKWIAPLDRLTELKLDVW 785
>08_02_0181 +
13923658-13923661,13925518-13925681,13925879-13925978,
13926072-13926244,13926486-13927016
Length = 323
Score = 28.7 bits (61), Expect = 6.9
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +2
Query: 596 FMGVNPNNVPEQPYDLFFGKWISEGQRDLIRFHSLKKRKFIGNTSMDAQ 742
F+G P+ + E + FF K+ + ++IR HS + + G DA+
Sbjct: 79 FVGGLPSALKEDEFKEFFSKFGKVVEHEIIRDHSTNRSRGFGFVVFDAE 127
>07_03_1746 -
29184422-29184552,29184848-29184980,29185182-29185258,
29186966-29186975
Length = 116
Score = 28.7 bits (61), Expect = 6.9
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = +1
Query: 670 SKGFNSVSFIKKTQVHWEYKHGCAT 744
SKGFNSVSF KK + K GC T
Sbjct: 48 SKGFNSVSF-KKRRTKKNEKDGCET 71
>03_05_0092 - 20714102-20717902
Length = 1266
Score = 28.7 bits (61), Expect = 6.9
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = -3
Query: 377 HLEVVF*SDLRKLICNWSILLALDHNSIQFFIKTDREAIFFAQSSEGSSTIQY 219
HL ++ ++L KLI + S+ ++ S Q F++ R IFFA S I++
Sbjct: 587 HLTIMT-NNLSKLINDLSLKISHSSGSDQHFLQRIRTIIFFADFSNSDEFIEF 638
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 28.3 bits (60), Expect = 9.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +2
Query: 698 LKKRKFIGNTSMDAQLXIVMANQXPIAPRHIVIDPFVGSGS 820
LK RKF G +S+ V ++ PI P H ++P SGS
Sbjct: 1662 LKPRKFTGTSSVSPP---VTSSFQPILPYHEDVEPVADSGS 1699
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,382,591
Number of Sequences: 37544
Number of extensions: 456068
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2647531240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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