Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_H05
(916 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 34 0.032
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 33 0.075
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 30 0.40
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 29 0.92
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 28 2.1
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 8.6
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 8.6
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 33.9 bits (74), Expect = 0.032
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Frame = +3
Query: 492 VTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSST--VIXPLT 665
VTP P S S PP +T T S P +++ S T + T +ST V +
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVP 360
Query: 666 PSNTXGTLXPP 698
P++T T PP
Sbjct: 361 PTSTSSTSTPP 371
Score = 32.3 bits (70), Expect = 0.099
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 492 VTPKTKPARKSPXSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIXP-LT 665
+TP P S S+P P T+ + S P T ST + + + S+T + P +
Sbjct: 247 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVP 306
Query: 666 PSNTXGTLXPP 698
P++T T PP
Sbjct: 307 PTSTSSTSTPP 317
Score = 31.9 bits (69), Expect = 0.13
Identities = 24/80 (30%), Positives = 36/80 (45%)
Frame = +3
Query: 492 VTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIXPLTPS 671
VTP P S S PP +T T S P +++ S T + T +ST P+TP+
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTT--PVTPT 412
Query: 672 NTXGTLXPPCTKXXSCSSXT 731
+ P T +C++ T
Sbjct: 413 VPPTSSSTPLT-TTNCTTST 431
Score = 29.5 bits (63), Expect = 0.70
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +3
Query: 492 VTPKTKPARKSPXSLP-PCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIXPLTP 668
+TP P S S+P P T+ + S P T ST S T + SS++ P+TP
Sbjct: 191 ITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTST-SCTTSTSIPTGGSSSLSTPITP 249
Query: 669 S 671
+
Sbjct: 250 T 250
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 32.7 bits (71), Expect = 0.075
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 552 TTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIXPLTPSNTXGTLXPPCTKXXSCSSXT 731
+T TS PP T+ ++ T ++T + P T NT T PP T S ++
Sbjct: 63 STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVV 122
Query: 732 PXXT 743
P T
Sbjct: 123 PPTT 126
Score = 29.1 bits (62), Expect = 0.92
Identities = 15/67 (22%), Positives = 29/67 (43%)
Frame = +3
Query: 534 LPPCWKTTEFTSRSCPPRTNST*SSITRKVLXMTVSSTVIXPLTPSNTXGTLXPPCTKXX 713
+PP + T+ + PP T+ ++ + ++T P T N+ T+ PP T
Sbjct: 70 VPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTHVN 129
Query: 714 SCSSXTP 734
+ + P
Sbjct: 130 TTTVVPP 136
Score = 28.7 bits (61), Expect = 1.2
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +3
Query: 492 VTPKTKPARKSPXSLPPCWKTTEFTSRSCPPRTN-ST*SSITRKVLXMTVSSTVIXPLTP 668
V P + + ++PP T+ T+ + PP T+ +T ++ + ++TV+ P T
Sbjct: 70 VPPPSTSHNSTTTTVPPT--TSMNTTTTVPPTTSLNTTTTTAPPTTHVNSTTTVVPPTTH 127
Query: 669 SNTXGTLXPPCTKXXSCSSXTP 734
NT T+ PP T + + P
Sbjct: 128 VNTT-TVVPPTTHVNTTTVVPP 148
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 30.3 bits (65), Expect = 0.40
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 574 DLEVNSVVFQHGGKLXGDFLAGFVFGVTECNFVV 473
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 29.1 bits (62), Expect = 0.92
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 218 ETAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQLWTKDGKE 361
ET K S K +K + + +++++ K NT++ A Q W+K KE
Sbjct: 128 ETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNWSKYIKE 175
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 27.9 bits (59), Expect = 2.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 185 QLYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 301
Q+++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 8.6
Identities = 16/71 (22%), Positives = 31/71 (43%)
Frame = -2
Query: 321 MVFLLPFSIRRFTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVAL 142
M F ++ T + +PF R+ HL S +T+ +Y+ + T ++++
Sbjct: 1 MRFFETLALALLTTGALAAPF---RHPHHLLNKRDVSVVTSKVYAYTTVTLEAAASAIST 57
Query: 141 EASAHTARTKA 109
+A A T A
Sbjct: 58 NGAAKEAATAA 68
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.8 bits (54), Expect = 8.6
Identities = 22/82 (26%), Positives = 40/82 (48%)
Frame = -2
Query: 288 FTASLITSPFFSFRYSEHLAIAVSYSPMTTLIYSCSASTSSVLGASVALEASAHTARTKA 109
F S ++ F R+S + S TT+ + S SVL ++ A+E S TA ++
Sbjct: 3567 FVPSSVSRSFSYSRFSSGSLDSSSVFNSTTVSTASGISQGSVLSSTRAIE-SESTASHRS 3625
Query: 108 NKVSLILAQWLSLKASQQTTSK 43
+ +S + + LS A ++S+
Sbjct: 3626 SVLSELSSYDLSTSAFSSSSSE 3647
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,568
Number of Sequences: 5004
Number of extensions: 56877
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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