Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_G15
(897 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 190 2e-49
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 95 1e-20
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 87 4e-18
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 73 6e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 43 7e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 9e-05
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 39 0.001
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 34 0.024
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.17
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.22
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.68
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 28 2.1
SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr... 27 3.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.8
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 26 6.3
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 26 8.4
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 8.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 190 bits (464), Expect = 2e-49
Identities = 106/194 (54%), Positives = 118/194 (60%), Gaps = 1/194 (0%)
Frame = +2
Query: 275 PXIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 454
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 455 PEEHPVLLTEAPLNPKAQQREDDPDHVXNIQHARHVRRHPSRALAVRVXSYHRYXAGLRX 634
PEEHP LLTEAPLNPK+ RE + +A L++
Sbjct: 98 PEEHPCLLTEAPLNPKS-NREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSG 156
Query: 635 RCLPHRAHL-XXXXXXXXXXXXGLSRSRLTDXLMKILTXXRYSFTTTAEXEIVRDIKXKL 811
+ H + L+ LTD LMKIL Y+F+TTAE EIVRDIK KL
Sbjct: 157 DGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKL 216
Query: 812 CYVALXFXXEMXXA 853
CYVAL F E+ A
Sbjct: 217 CYVALDFEQELQTA 230
Score = 131 bits (317), Expect = 1e-31
Identities = 61/76 (80%), Positives = 66/76 (86%)
Frame = +3
Query: 489 PSTPRPNREKMTQIMFXTFNTPAMYVAIQAVLSLYASXRTTGIXLDSGEGVSHTVPIYEG 668
P P+ NREKMTQI+F TFN PA YVAIQAVLSLYAS RTTGI LDSG+GV+HTVPIYEG
Sbjct: 109 PLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEG 168
Query: 669 YALPHAILXXDLAGRD 716
YALPHAI+ DLAGRD
Sbjct: 169 YALPHAIMRLDLAGRD 184
Score = 84.2 bits (199), Expect = 2e-17
Identities = 36/41 (87%), Positives = 39/41 (95%)
Frame = +1
Query: 166 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPXHQG 288
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRP H G
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHG 42
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 95.1 bits (226), Expect = 1e-20
Identities = 66/206 (32%), Positives = 95/206 (46%), Gaps = 5/206 (2%)
Frame = +2
Query: 290 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEH 466
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 467 PVLLTEAPLNPKAQQREDDPDHVXNIQHARHVRRHPSRALAVRVXSYHRYXAGLRXRC-- 640
P+LLTE PL + +E ++ + + LA+ + G+ C
Sbjct: 107 PLLLTEPPL-ANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASA---RTTGIVLECGD 162
Query: 641 -LPHRAHLXXXXXXXXXXXXGLSRSR-LTDXLMKILTXXRYSFTTTAEXEIVRDIKXKLC 814
L H + R +TD L L + ++AE EIVR+IK K C
Sbjct: 163 GLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCC 222
Query: 815 YVALXFXXEMXXAXSXXPSXSXTKXP 892
YVA F E+ P + P
Sbjct: 223 YVASDFRSEIESWTEHKPQIHTYQLP 248
Score = 83.8 bits (198), Expect = 3e-17
Identities = 34/70 (48%), Positives = 53/70 (75%)
Frame = +3
Query: 507 NREKMTQIMFXTFNTPAMYVAIQAVLSLYASXRTTGIXLDSGEGVSHTVPIYEGYALPHA 686
N+EK+ + + T N PA+ ++Q VL+LYAS RTTGI L+ G+G++H+VPIY+G+++P A
Sbjct: 120 NKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
Query: 687 ILXXDLAGRD 716
I ++ GRD
Sbjct: 180 IQQEEIGGRD 189
Score = 51.2 bits (117), Expect = 2e-07
Identities = 20/34 (58%), Positives = 26/34 (76%)
Frame = +1
Query: 184 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPXHQ 285
+ +DNGSG KAGFAGDD P+ +FP+ VGR H+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHE 45
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 86.6 bits (205), Expect = 4e-18
Identities = 41/87 (47%), Positives = 54/87 (62%)
Frame = +3
Query: 456 PRNTQSCSLRLPSTPRPNREKMTQIMFXTFNTPAMYVAIQAVLSLYASXRTTGIXLDSGE 635
PR + P P NREKM + MF + +YVAIQAVLSLYA ++G+ +DSG+
Sbjct: 98 PRGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGD 157
Query: 636 GVSHTVPIYEGYALPHAILXXDLAGRD 716
GV+H VP+YE L H + D+AGRD
Sbjct: 158 GVTHIVPVYESVVLNHLVGRLDVAGRD 184
Score = 77.0 bits (181), Expect = 3e-15
Identities = 29/69 (42%), Positives = 51/69 (73%)
Frame = +2
Query: 311 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 490
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 491 LNPKAQQRE 517
+NP A + +
Sbjct: 110 MNPVANREK 118
Score = 48.0 bits (109), Expect = 2e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +1
Query: 172 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 276
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
Score = 36.7 bits (81), Expect = 0.004
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +2
Query: 719 TDXLMKILTXXRYSFTTTAEXEIVRDIKXKLCYVA 823
T L+ +L Y+F TA+ E VR++K KLCYV+
Sbjct: 186 TRYLISLLLRKGYAFNRTADFETVREMKEKLCYVS 220
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.9 bits (171), Expect = 6e-14
Identities = 37/84 (44%), Positives = 51/84 (60%), Gaps = 8/84 (9%)
Frame = +3
Query: 489 PSTPRPNREKMTQIMFXTFNTPAMYVAIQAVLSLYASXRT--------TGIXLDSGEGVS 644
P P NRE +IMF +FN +Y+A+QAVL+L AS + TG +DSG+GV+
Sbjct: 132 PLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVT 191
Query: 645 HTVPIYEGYALPHAILXXDLAGRD 716
H +P+ EGY + +I LAGRD
Sbjct: 192 HIIPVAEGYVIGSSIKTMPLAGRD 215
Score = 68.9 bits (161), Expect = 9e-13
Identities = 31/70 (44%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Frame = +2
Query: 314 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 490
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 491 LNPKAQQRED 520
LNP + RE+
Sbjct: 133 LNP-PENREN 141
Score = 40.7 bits (91), Expect = 3e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 184 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 267
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 42.7 bits (96), Expect = 7e-05
Identities = 18/48 (37%), Positives = 27/48 (56%)
Frame = +2
Query: 356 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNP 499
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNP 110
Score = 41.5 bits (93), Expect = 2e-04
Identities = 21/60 (35%), Positives = 30/60 (50%)
Frame = +3
Query: 498 PRPNREKMTQIMFXTFNTPAMYVAIQAVLSLYASXRTTGIXLDSGEGVSHTVPIYEGYAL 677
P NR K + MF + PA Y+A Q + +AS + T +D G S IY+G+ L
Sbjct: 110 PPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVL 169
Score = 40.3 bits (90), Expect = 4e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 169 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 270
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 42.3 bits (95), Expect = 9e-05
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Frame = +2
Query: 302 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 478
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 479 TEAPLNP 499
TE NP
Sbjct: 121 TEPLANP 127
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 474 CSLRLPSTPRPNREKMTQIMFXTFNTPAMYVAIQAVLSLYASXR--TTGIXLDSGEGVSH 647
C + P R MT+++F +N P++ I + S Y + + ++GI L+ G SH
Sbjct: 119 CMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASH 178
Query: 648 TVPIYEG 668
+P+ G
Sbjct: 179 VIPVLNG 185
Score = 35.1 bits (77), Expect = 0.014
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +1
Query: 184 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGR 273
LV+DNGS +AG+ G+ P+ VF ++V R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSR 56
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Frame = +2
Query: 311 KDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 484
++ YV DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 49 RNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITE 108
Query: 485 APLNPKAQQRE 517
NP++ +++
Sbjct: 109 PSWNPQSVRQQ 119
Score = 36.7 bits (81), Expect = 0.004
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 169 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 270
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 34.3 bits (75), Expect = 0.024
Identities = 45/171 (26%), Positives = 62/171 (36%), Gaps = 2/171 (1%)
Frame = +1
Query: 202 SGMCKAGFAGDDAPRAVFPSIVGRPXHQGRDGRYGTEGLLCRR*GTEQKRYPDPQIPHRT 381
S M +GF G A P + G + G YG G G + Y P +
Sbjct: 1489 SPMVDSGFVGSPDAAAFSPLVQGGSEGREGFGDYGLLGAASPYKGVQSPGYTSPFSSAMS 1548
Query: 382 RNRH*LG*HGEDLASYLLQ*AACRPRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPC 561
+G SY + P + SPA+ S PT + +S P
Sbjct: 1549 PG------YGLTSPSY----SPSSPGYSTSPAYMPSSPSYSPTSPSYSPTSPSYSPTSPS 1598
Query: 562 TSPSKPCSRCTRPVVPPVS-CWTPXKVSPTPCPSTKDTHSPT-PSXVWT*P 708
SP+ P T P P S ++P S +P T ++SPT PS T P
Sbjct: 1599 YSPTSPSYSATSPSYSPTSPSYSPTSPSYSP---TSPSYSPTSPSYSPTSP 1646
Score = 27.5 bits (58), Expect = 2.7
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 469 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPXKVSP 645
SP++ + PT + +S P SP+ P T P P S ++P S
Sbjct: 1603 SPSYSATSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1662
Query: 646 TPCPSTKDTHSPT-PSXVWT*P 708
+P T ++SPT PS T P
Sbjct: 1663 SP---TSPSYSPTSPSYSPTSP 1681
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 469 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPXKVSP 645
SP++ + PT + +S P SP+ P T P P S ++P S
Sbjct: 1638 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1697
Query: 646 TPCPSTKDTHSPT-PSXVWT*P 708
+P T ++SPT PS T P
Sbjct: 1698 SP---TSPSYSPTSPSYSPTSP 1716
Score = 26.6 bits (56), Expect = 4.8
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Frame = +1
Query: 469 SPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPXKVSP 645
SP++ + PT + +S P SP+ P T P P S ++P S
Sbjct: 1673 SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1732
Query: 646 TPCPSTKDTHSPT-PSXVWT*P 708
+P T ++SPT PS T P
Sbjct: 1733 SP---TSPSYSPTSPSYSPTSP 1751
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.17
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 529 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPXKVSPTPCPSTKDTHSPTPS 690
SC+ ++ PP T S S P VPP S T + PT ST SP P+
Sbjct: 171 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPT 224
Score = 30.3 bits (65), Expect = 0.39
Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +1
Query: 529 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPXKVSPTPCPSTKDTHSPTPS 690
SC+ ++ PP T S S P VPP S T + PT ST +P P+
Sbjct: 114 SCTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPT 167
Score = 28.3 bits (60), Expect = 1.6
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Frame = +1
Query: 454 PRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTP 630
P T S SP P T SC+ ++ P T S S P VPP S T
Sbjct: 209 PTSTSSTDTNSSPLPTTST------SCTTSTSIP--TGGSSSLSTPITPTVPPTSTSSTS 260
Query: 631 XKVSPTPCPSTKDTHSPTPS 690
+ PT ST SP P+
Sbjct: 261 IPIPPTSTSSTDTNSSPLPT 280
Score = 28.3 bits (60), Expect = 1.6
Identities = 26/85 (30%), Positives = 34/85 (40%)
Frame = +1
Query: 463 TPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPXKVS 642
T P S P PT P S S ST PP S S + + + SC T +
Sbjct: 343 TSIPPTGNSTTPVTPTVP--PTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIP 400
Query: 643 PTPCPSTKDTHSPTPSXVWT*PVAT 717
PT +T T + P+ T P+ T
Sbjct: 401 PTGNSTTPVTPTVPPTSSST-PLTT 424
Score = 27.9 bits (59), Expect = 2.1
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 529 SCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPXKVSPTPC-PSTKDTHSPTPSXVWT* 705
SC+ ++ PP + + P + P VPP S TP ++ T C ST ++ TP V +
Sbjct: 392 SCTTSTSIPPTGNSTTPVT----PTVPPTSSSTP--LTTTNCTTSTSVPYTSTP--VTST 443
Query: 706 PVAT 717
P+AT
Sbjct: 444 PLAT 447
Score = 26.6 bits (56), Expect = 4.8
Identities = 23/76 (30%), Positives = 29/76 (38%)
Frame = +1
Query: 463 TPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPXKVS 642
T P S P PT P S S ST PP S S + + SC T +
Sbjct: 289 TSIPPTGNSTTPVTPTVP--PTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIP 346
Query: 643 PTPCPSTKDTHSPTPS 690
PT +T T + P+
Sbjct: 347 PTGNSTTPVTPTVPPT 362
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 31.1 bits (67), Expect = 0.22
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 556 PCTSPSKPCSRCTRPVVPPVSCWTPXKVSPTPCPSTKDTHSPTPS 690
P T+P P T PV P S P P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 30.3 bits (65), Expect = 0.39
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = +1
Query: 547 TRPPCTSPSKPCSRCTRPVVPPVSCWTPXKVSPTPCPSTKDTHSPTPSXVWT*PVAT 717
++P TSP+ P +R P VP +S P P P PS P PS P+ T
Sbjct: 997 SKPVSTSPAAPLARV--PPVPKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPT 1047
Score = 27.5 bits (58), Expect = 2.7
Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Frame = +1
Query: 553 PPCTSPSKPCSRCTRPVVPPVSCWTPXK-----VSPTPCPSTKDTHSPTPSXVWT*PVAT 717
PP +P P P VPP S P + P P P+ K P PS V+T
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPSSE-APSVST 1251
Query: 718 HRLXHEDPH 744
R PH
Sbjct: 1252 PRSSVPSPH 1260
Score = 27.1 bits (57), Expect = 3.6
Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Frame = +1
Query: 454 PRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPV--VPPVSCWT 627
P G P P P P PP +PS +P VPPV
Sbjct: 1136 PSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVP--P 1193
Query: 628 PXKVSPTPCPSTKDTHSPTPS 690
P + P P PS P PS
Sbjct: 1194 PSEAPPVPKPSVGVPPVPPPS 1214
Score = 25.8 bits (54), Expect = 8.4
Identities = 17/48 (35%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Frame = +1
Query: 553 PPCTSPSKPCSRCTRP--VVPPVSCWTPXKVSPTPCPSTKDTHSPTPS 690
PP PS +P VPPV P P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.68
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +1
Query: 577 PCSRCTRPVVPPVSCWTPXKVSPTPCPSTKDTHSP 681
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
Score = 26.6 bits (56), Expect = 4.8
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = +1
Query: 472 PAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRC 591
P G+P P P P+SC + C S+PC C
Sbjct: 632 PVACGTPIPDCPYLCVLPKSCHHPQVKHNCHPTSEPCPPC 671
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 577 PCSRCTRPVVPPVSCWTPXKVSPTPCPST 663
P SR T+P+ S +P +VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPCC306.02c |||Rab GTPase binding |Schizosaccharomyces pombe|chr
3|||Manual
Length = 171
Score = 27.1 bits (57), Expect = 3.6
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = +3
Query: 480 LRLPSTPRPNREKMTQIMFXTFNTPAMYVAIQAVLSLYASXRTTGIXLDSGEGV 641
+R S PR E ++I F + Y+AI A+L +YA R + + G GV
Sbjct: 38 VRRISRPRNFSEAQSRISFNFSRFSSNYLAIIAMLVIYALIRNPLLLIVIGIGV 91
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.8
Identities = 20/76 (26%), Positives = 28/76 (36%)
Frame = +1
Query: 460 GTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPXKV 639
G +PAH S P P P+ + PP + P P + PP+ P
Sbjct: 1679 GGMAPAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSA-------PPMPA-GPPSA 1730
Query: 640 SPTPCPSTKDTHSPTP 687
P P P++ P P
Sbjct: 1731 PPPPLPASSAPSVPNP 1746
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 26.2 bits (55), Expect = 6.3
Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Frame = +1
Query: 418 LASYLLQ*AACRPRGTPSPAH*GSPQPQGPTERR*PRSCSKHSTRPPCTSPSKPCSRCTR 597
+AS LL A + +G PSPA S P++ S T+ T S P S T
Sbjct: 498 VASPLLHLLASKSQGLPSPATTDSNTHMLPSQGSLLPPSSISETKSFSTKASTPLS--TD 555
Query: 598 PVVPPV-SCWTPXKVSPTPCPSTKDTHSPTPS 690
+ P+ S P V PT T +HS S
Sbjct: 556 DIATPLSSAPNPPSVMPTYARKT-SSHSERSS 586
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 25.8 bits (54), Expect = 8.4
Identities = 11/49 (22%), Positives = 25/49 (51%)
Frame = +3
Query: 423 IIPSTMSCVSPPRNTQSCSLRLPSTPRPNREKMTQIMFXTFNTPAMYVA 569
++ S+ S +SPPR+ ++ + +P + + ++ F T + VA
Sbjct: 436 VLSSSASPLSPPRHLRAAEKNIALNTQPPAQILNRLYFFCIQTQLLEVA 484
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 8.4
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 371 PIEHGIVTNWDDMEKIWHHTF 433
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,345,051
Number of Sequences: 5004
Number of extensions: 70506
Number of successful extensions: 269
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 452494940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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