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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_G09
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo...    53   6e-08
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    45   2e-05
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    40   6e-04
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c...    39   0.001
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    37   0.003
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    36   0.010
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    33   0.041
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    32   0.095
SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|c...    32   0.095
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    31   0.17 
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    30   0.38 
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p...    29   1.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    28   1.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   1.6  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    28   2.1  
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   2.7  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   4.7  
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    27   4.7  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   4.7  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ...    26   8.3  

>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
           Itr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 575

 Score = 52.8 bits (121), Expect = 6e-08
 Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 5/154 (3%)
 Frame = +2

Query: 335 ESWVAALPGFALVLGNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXXVGRF 514
           + ++ +      +LG +    +   FGR+    I+ +I++ G              VGRF
Sbjct: 129 KEFITSATSLGALLGGIIAGALADFFGRKPVIAIASIIIIVGSIVQVTAHHLWHMIVGRF 188

Query: 515 LQGLSVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLGTLAVHTVGSYY-----SWKI 679
           + G  VG+ S +IP+ + E   S  RG+  +   +++  G +  + + + +      W+ 
Sbjct: 189 VIGWGVGIASLIIPLYLSEIAPSKIRGRLVIIYVLLITAGQVIAYGIDTAFEHVHNGWRW 248

Query: 680 TXLVCSTITFFDLIIVILSPESPSWLXAQGRYDE 781
              +      F L I+I  PESP  L  + R  E
Sbjct: 249 MVGLAMVPAAFQLFILIWLPESPRLLVKKERSQE 282


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 44.8 bits (101), Expect = 2e-05
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
 Frame = +2

Query: 503 VGRFLQGLSVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLGTLAVHTVGS-----YY 667
           VGRF+ G  +G+ S ++P+ I E   +  RG+  +   V +  G L  +++ +     + 
Sbjct: 178 VGRFIVGYGIGLTSLIVPMYITELAPARLRGRLVIIYVVFITGGQLIAYSLNAAFEHVHQ 237

Query: 668 SWKITXLVCSTITFFDLIIVILSPESPSWLXAQGRYDECRXVFKVI 805
            W+I   + +      LI +  +PESP +L    R++    V+K++
Sbjct: 238 GWRIMFGIGAAPALGQLISLFWTPESPRYLL---RHNHVEKVYKIL 280


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 10/145 (6%)
 Frame = +2

Query: 377 GNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXX-VGRFLQGLSVGMGSCLI 553
           G L   PV  K G+R++ I+   + L G               V +   GLS+G  S + 
Sbjct: 40  GCLLSSPVADKIGKRLSIIVWTTVYLIGIIIQVTTVPSWVQILVAKIWTGLSIGALSVIT 99

Query: 554 PIMIGEYTSSTRRGQFSMCMSVIMGLGTL--AVHTVGSY-YS------WKITXLVCSTIT 706
           P    E   +  RG       + + LG    A   +G++ YS      W+I+  +     
Sbjct: 100 PGYQSEVAPAIMRGAIVTTYQLFITLGIFIAACINMGTHKYSHGTTAQWRISIGINLLWG 159

Query: 707 FFDLIIVILSPESPSWLXAQGRYDE 781
              L+ +I  PESP +L A G+ DE
Sbjct: 160 IITLVGIIFLPESPRYLIAIGKDDE 184


>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
 Frame = +2

Query: 329 TSESWVAALPGFALVLGNLAVPP---VMAKF-GRRIANIISIVIVLTGWXXXXXXXXXXX 496
           +S SW+    G A  L   ++ P   +M++  GR+I    SIV+ L G            
Sbjct: 125 SSYSWI----GTAYTLAQTSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLW 180

Query: 497 XXVGRFLQGLSVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLGTLAVHTVGSYYSWK 676
             + R +QG+  G  + L+ I+I + T    R  ++ CM V  GL ++    +G   S K
Sbjct: 181 LVLCRAVQGIGGGGITSLVTIVIADITPLQTRPYYTGCMGVTWGLASVMGPLIGGAISQK 240


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 7/100 (7%)
 Frame = +2

Query: 503 VGRFLQGLSVGMGSCLIPIMIGEYTSSTRRGQ-------FSMCMSVIMGLGTLAVHTVGS 661
           VG+   GL++G  S L P    E      RG        F  C ++I     +  H +  
Sbjct: 115 VGKLFTGLTIGALSVLSPGYQSEVAPPQIRGAVVSTYQLFQTCGTLIAACINMGTHKLRK 174

Query: 662 YYSWKITXLVCSTITFFDLIIVILSPESPSWLXAQGRYDE 781
             SW+ +  +      F ++ V+  PESP +L  +GR +E
Sbjct: 175 TASWRTSFGINILWGIFLMVGVLFLPESPRYLIYKGRDEE 214


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 4/122 (3%)
 Frame = +2

Query: 329 TSESWVAALPGFALVLGNLAVPP---VMAKF-GRRIANIISIVIVLTGWXXXXXXXXXXX 496
           +S SW+    G A  L   ++ P   +M++  GR+I    SIV+ L G            
Sbjct: 125 SSYSWI----GTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLW 180

Query: 497 XXVGRFLQGLSVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLGTLAVHTVGSYYSWK 676
             + R +QG+  G    L+ I+I + T    R  ++ CM V  G+ ++    +G   S  
Sbjct: 181 LVLCRAVQGIGGGGIMSLVTIVIADITPLQTRPYYTGCMGVTWGVASVMGPLIGGAISQN 240

Query: 677 IT 682
            T
Sbjct: 241 TT 242


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 6/101 (5%)
 Frame = +2

Query: 509 RFLQGLSVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLGTLAVHTVG-----SYYSW 673
           RF  G        ++   + +  S+  RG      S ++  G L    VG     SY  W
Sbjct: 231 RFFAGFFASAPLTVVAAALADMYSNKYRGTAITLFSAMVFDGPLVSPIVGGFLTKSYLGW 290

Query: 674 KITXLVCSTITFFDLIIVIL-SPESPSWLXAQGRYDECRXV 793
           + T  + S + FF LIIV L   E+ S    QG+  E R +
Sbjct: 291 RWTEYITSFMGFFALIIVYLFCDETYSKAIIQGKAKEYRAI 331


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 7/100 (7%)
 Frame = +2

Query: 503 VGRFLQGLSVGMGSCLIPIMIGEYTSSTRRGQ-------FSMCMSVIMGLGTLAVHTVGS 661
           VG+ L G+ +G  S L P    E      RG        FS   +++     +  H +  
Sbjct: 115 VGKILAGVGIGALSVLSPGYQSEVAPPQIRGAVVATYQIFSTGAALVAACINMGTHKLRK 174

Query: 662 YYSWKITXLVCSTITFFDLIIVILSPESPSWLXAQGRYDE 781
             SW+ +  +        ++ V+  PESP +L  +GR +E
Sbjct: 175 TASWRTSFGINMLWGILLMVGVLFLPESPRYLIYKGRDEE 214


>SPBC17G9.06c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 334

 Score = 32.3 bits (70), Expect = 0.095
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 328 FIDWYERVRLSQLWHENGSVSKHHSKLRHVQRHASDHETLSLERGYPF 185
           F +W  + R+   W+E+GS  +HH  L  +Q        +      PF
Sbjct: 173 FHEWQNKPRVEYFWNESGSWDQHHEYLTTLQNDPHSFGVIGCFNDVPF 220


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 11/140 (7%)
 Frame = +2

Query: 395 PVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXX-VGRFLQGLSVGMGSCLIPIMIGE 571
           P+M + G+R + +   ++ L G               V +   GLS+G  S L P    E
Sbjct: 78  PLMDRIGKRTSIMFWTIVYLIGIILQVTAVPSWVQIMVAKIWTGLSIGALSVLAPGFQSE 137

Query: 572 YTSSTRRGQF--SMCMSVIMGLGTLAVHTVGSYY-----SWKITX---LVCSTITFFDLI 721
              +  RG    +  ++V  G+   A   +G++       W+++    L+   ITF  + 
Sbjct: 138 VAPADLRGTIVTTYQLAVTGGIFIAACINMGTHKLHKTAQWRVSMGINLLWGIITFIGIS 197

Query: 722 IVILSPESPSWLXAQGRYDE 781
            +   PESP +L + GR +E
Sbjct: 198 FL---PESPRYLISVGRDEE 214


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 35/153 (22%), Positives = 64/153 (41%), Gaps = 13/153 (8%)
 Frame = +2

Query: 374 LGNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXX-VGRFLQGLSVGMGSCL 550
           +G L   P+  +FG+R   +   ++ +TG               V +   GL +G  S +
Sbjct: 71  VGCLLSSPLGDRFGKRKCIMGWTLVYITGVIVQLTTIPSWVQMMVAKIWTGLGIGALSVI 130

Query: 551 IPIMIGEYTSSTRRGQFSMCMSVIMGLGTL--AVHTVGSY-YS------WKITX---LVC 694
            P    E +    RG       + + LG    A   +G++ Y+      W++     L+ 
Sbjct: 131 APGYQSESSPPHIRGAIVTTYQLFITLGIFIAACINMGTHKYTTHPEAQWRVPIGINLLW 190

Query: 695 STITFFDLIIVILSPESPSWLXAQGRYDECRXV 793
             + FF ++ +   PESP +L  +GR +EC  +
Sbjct: 191 GILMFFGMLFL---PESPRYLAVKGRNEECMKI 220


>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 531

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 27/145 (18%), Positives = 55/145 (37%), Gaps = 8/145 (5%)
 Frame = +2

Query: 371 VLGNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXX-VGRFLQGLSVGMGSC 547
           + G +   P+  +FG+R++ I    + + G               V +   G+ +G  S 
Sbjct: 74  LFGCIISSPIADRFGKRLSIIGFCAVYIIGIIVQVTAVPSWVQIMVAKIWTGIGIGALSV 133

Query: 548 LIPIMIGEYTSSTRRGQFSMCMSVIMGLG-------TLAVHTVGSYYSWKITXLVCSTIT 706
           L P    E    + RG   +   + +  G        +  H +     W+++  +     
Sbjct: 134 LAPGYQSETAPPSIRGTVVVTYQLFVTGGIFIAACINMGTHKLHKTAQWRVSIGINLLWG 193

Query: 707 FFDLIIVILSPESPSWLXAQGRYDE 781
              +I ++  PESP +L   G+ +E
Sbjct: 194 IITMIGILFLPESPRYLIQVGKDEE 218


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 508 SYEEQRKACR*RNGYPSS*DDHYADDIGYSSPEFSHH-RWHRKVSQHQSESRQCSD 344
           S +  R +   R+ +PSS   H  DD   S P  S H R  R+  +  S S +  D
Sbjct: 148 SRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSRRRYEERSSRSSRAHD 203


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 514 PARTVRGHGFVSHSDN--DRRIHKLNEEGSILNVHVGYNGLRYV 639
           P       GF++H  N  +  +HKL EE    + H+G N +R++
Sbjct: 631 PTLASEDSGFIAHRKNQFEENLHKLEEERYEYDRHIGAN-MRFI 673


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 310 RVRLSQLWHENGSVSKHHSKLRHVQRHASDHETLSLERGYPFFQ 179
           R +L+ L HENG +S   S      ++ S   TL+ E    +FQ
Sbjct: 143 RSKLAALEHENGILSLQLSSSNKKDKNTSSVTTLTSEEDVSYFQ 186


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 25/126 (19%), Positives = 49/126 (38%), Gaps = 8/126 (6%)
 Frame = +2

Query: 338 SWVAALPGFALVLGNLAVPPVMAKF----GRRIANIISIVIVLTGWXXXXXXXXXXXXXV 505
           SW A     A ++   A  P+  KF    GR+   + +  +   G               
Sbjct: 127 SWTAT----AYMISCTAFQPLFGKFCDIYGRKKTLLAAYCVFGIGCFLCGTSRSLWQLVA 182

Query: 506 GRFLQGLSVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLGTLAVHTVGSYY----SW 673
            R + G+  G  +  + I++ +     +RG +   ++V   +G+     VG Y+    +W
Sbjct: 183 ARAIAGIGGGGMNSTVSILMSDIVPLKQRGTYQGIINVFFAIGSSLGGPVGGYFADQYTW 242

Query: 674 KITXLV 691
           +I  L+
Sbjct: 243 RIGFLI 248


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/96 (20%), Positives = 35/96 (36%)
 Frame = +2

Query: 347 AALPGFALVLGNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXXVGRFLQGL 526
           A L    ++ GNL   P+  +FGRR   +I   +                  V RF  GL
Sbjct: 84  ATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGL 143

Query: 527 SVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLG 634
              +G       + +      RG++ +    ++ +G
Sbjct: 144 FGSVGLSNGSGSLADLFEKKDRGKYMVIYFTVLSIG 179


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 33/143 (23%), Positives = 52/143 (36%), Gaps = 8/143 (5%)
 Frame = +2

Query: 377 GNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXX-VGRFLQGLSVGMGSCLI 553
           G L   P   + G+R + I   VI L G               V +   GL +G  S L 
Sbjct: 72  GCLISSPTTDRIGKRNSIIGFCVIYLIGVIIQVTAVPSWVQIMVAKIWTGLGIGALSVLA 131

Query: 554 PIMIGEYTSSTRRGQ----FSMCMSV---IMGLGTLAVHTVGSYYSWKITXLVCSTITFF 712
           P    E      RG     + +C++    I     +  H +     W+++  +       
Sbjct: 132 PGYQSEVAPPHIRGTIVVTYQLCVTAGIFIAACINMGTHKLYKTAQWRVSIGINLLWGII 191

Query: 713 DLIIVILSPESPSWLXAQGRYDE 781
            L+ V    ESP +L + G+ DE
Sbjct: 192 TLVGVSFLSESPRYLVSIGKDDE 214


>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = +3

Query: 267 DTLPFSCHSCESRTRSYQSMK---PXNLGSLHCLDSLWC 374
           D L F C++C    + Y  M+   P N GS   L++L C
Sbjct: 381 DKLNFLCNACGLYNKQYGVMRPLSPRNKGSSKALENLVC 419


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/96 (20%), Positives = 35/96 (36%)
 Frame = +2

Query: 347 AALPGFALVLGNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXXVGRFLQGL 526
           A L    ++ GNL   P+  +FGRR   +I   +                  V RF  GL
Sbjct: 84  ATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGL 143

Query: 527 SVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLG 634
              +G       + +      RG++ +    ++ +G
Sbjct: 144 FGSVGLSNGSGSLADLFEKKDRGKYMVIYFTVLSIG 179


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 20/96 (20%), Positives = 35/96 (36%)
 Frame = +2

Query: 347 AALPGFALVLGNLAVPPVMAKFGRRIANIISIVIVLTGWXXXXXXXXXXXXXVGRFLQGL 526
           A L    ++ GNL   P+  +FGRR   +I   +                  V RF  GL
Sbjct: 84  ATLYTLGILFGNLIFAPLSEQFGRRPIYLIGYSVFALLQIPIALSVNLAMFLVFRFFSGL 143

Query: 527 SVGMGSCLIPIMIGEYTSSTRRGQFSMCMSVIMGLG 634
              +G       + +      RG++ +    ++ +G
Sbjct: 144 FGSVGLSNGSGSLADLFEKKDRGKYMVIYFTVLSIG 179


>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 320

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 214 FRGRWRVSEHVAAWNGVWIRCHSRATAA 297
           FRG  ++ EH+ +  GVW+    +   A
Sbjct: 284 FRGLQKLMEHITSKEGVWVATREQIAQA 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,560,421
Number of Sequences: 5004
Number of extensions: 75994
Number of successful extensions: 203
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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