Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_G09
         (890 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           24   2.1  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    23   3.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    23   3.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   8.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   8.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = +3

Query: 360 DSLWCWET 383
           DS+WCW+T
Sbjct: 455 DSVWCWDT 462


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 582 ELVYSPIIIGMRHEPMPTDSPCRNLPTR 499
           +L Y   II +   P+P    C N P R
Sbjct: 103 KLYYKNYIINIEQIPVPVPIYCGNFPPR 130


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -3

Query: 582 ELVYSPIIIGMRHEPMPTDSPCRNLPTR 499
           +L Y   II +   P+P    C N P R
Sbjct: 344 KLYYKNYIINIEQIPVPVPIYCGNFPPR 371


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/33 (24%), Positives = 20/33 (60%)
 Frame = +3

Query: 738 RNRRAGSRHRADTTNAEXCLRLLXTIDXXEELN 836
           ++R  GSR R++T+N    + L   ++  ++++
Sbjct: 81  KSRSPGSRDRSNTSNTSKTVILSDKLESSDDIS 113


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 521 GLSVGMGSCLIPIMIGE 571
           G + G+G CLI  ++G+
Sbjct: 14  GANSGIGKCLIECLVGK 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,899
Number of Sequences: 438
Number of extensions: 5455
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28783482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)