Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_G08
         (875 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   8.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 204 MDFQLCRLRLXRGNFS*RN*RWSW 275
           MD QLC + +    ++ R+ R+ W
Sbjct: 147 MDRQLCHIEIESFGYTMRDIRYKW 170


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 204 MDFQLCRLRLXRGNFS*RN*RWSW 275
           MD QLC + +    ++ R+ R+ W
Sbjct: 147 MDRQLCHIEIESFGYTMRDIRYKW 170


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 204 MDFQLCRLRLXRGNFS*RN*RWSW 275
           MD QLC + +    ++ R+ R+ W
Sbjct: 86  MDRQLCHIEIESFGYTMRDIRYKW 109


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 279 LSKTIFSFFTRSFRVXAVIGITGNPCSANFVRN 181
           L+ T+F     +  +  +IGI    C AN ++N
Sbjct: 192 LAGTVFGSVAIAIAIVELIGIICALCLANSIKN 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,848
Number of Sequences: 438
Number of extensions: 5109
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28402218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)