Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP15_F_G06
         (945 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    35   0.015
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    30   0.55 
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    29   0.95 
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    29   0.95 
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch...    29   0.95 
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce...    29   1.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   2.9  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   8.9  

>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 35.1 bits (77), Expect = 0.015
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +2

Query: 293 GXVIXIDLGTXYSCVXVYKMDVXKSLP-*PGNRLXPS*RGPXPHGXPLIGDAAXKPLTNQ 469
           G VI IDLGT YSCV V K    + +    GNR+ PS          L+G+AA     + 
Sbjct: 35  GTVIGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPS-YVAFTEDERLVGEAAKNQAPSN 93

Query: 470 P 472
           P
Sbjct: 94  P 94


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 302 IXIDLGTXYSCVXVYKMDVXKSLP-*PGNRLXPS*RGPXPHGXPLIGDAAXKPLTNQP 472
           I IDLGT YSCV V++    + +P   G R  PS          L+GDAA       P
Sbjct: 9   IGIDLGTTYSCVAVWETANVEIIPNDQGARTTPS-FVAFTETERLVGDAAKNQAAMNP 65


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 302 IXIDLGTXYSCVXVYKMDVXKSLP-*PGNRLXPS*RGPXPHGXPLIGDAAXKPLTNQP 472
           I IDLGT YSCV  +  +  + +    GNR  PS          LIGDAA   +   P
Sbjct: 5   IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPS-YVAFTDTERLIGDAAKNQVAMNP 61


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +2

Query: 302 IXIDLGTXYSCVXVYKMDVXKSLP-*PGNRLXPS*RGPXPHGXPLIGDAAXKPLTNQP 472
           I IDLGT YSCV  +  +  + +    GNR  PS          LIGDAA   +   P
Sbjct: 5   IGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPS-YVAFTDTERLIGDAAKNQVAMNP 61


>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 187

 Score = 29.1 bits (62), Expect = 0.95
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 315 WVPLTXVSVSTKWTCXNHCHDQGTASPL 398
           WV +T   +   + C NH  D+G A+P+
Sbjct: 37  WVLITKTKLDFFYVCYNHLQDRGFATPI 64


>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 674

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 293 GXVIXIDLGTXYSCVXVYKMDVXKSLP-*PGNRLXPS*RGPXPHGXPLIGDAAXKPLTNQ 469
           G VI IDLGT  SC+ + +    K +    G R  PS       G  L+G +A +     
Sbjct: 50  GPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVIN 109

Query: 470 P 472
           P
Sbjct: 110 P 110


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/45 (33%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
 Frame = +3

Query: 603  PXXPTSKLSQRPTNXXXP----PQPXPPPXXXPPKXHGKPRXXXP 725
            P  P S    RP +   P    P P PPP   PP     P    P
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGP 1727



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/24 (41%), Positives = 10/24 (41%)
 Frame = +3

Query: 654  PPQPXPPPXXXPPKXHGKPRXXXP 725
            PP   PPP   PP   G P    P
Sbjct: 1710 PPMSVPPPPSAPPMPAGPPSAPPP 1733


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +2

Query: 836 PHPPXXTPPXPPXPXPP 886
           P PP   PP  P P PP
Sbjct: 13  PPPPGFEPPSQPPPPPP 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,965
Number of Sequences: 5004
Number of extensions: 37371
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)