Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP15_F_G05
(908 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 336 2e-93
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 335 6e-93
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 334 7e-93
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 2.8
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 27 3.7
SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr 2|... 27 4.9
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p... 26 6.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 336 bits (826), Expect = 2e-93
Identities = 159/256 (62%), Positives = 190/256 (74%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 430 YKLCKVKRVATGPXNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESXNL 609
YKLCKVKRV G VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 610 CMITGXRNLGRVGTIVSARDIPAPSNIVHIKXSTGTHLRHXX*TTCS*SXKXTKAYISLP 789
M+TG RN+GRVGTIV I+H+K + + + K++ISLP
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRL-SNVFVIGETGKSWISLP 239
Query: 790 XGKGIXLTIXXEXDKR 837
GKG+ L+I E D+R
Sbjct: 240 KGKGVKLSITEERDRR 255
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 335 bits (823), Expect = 6e-93
Identities = 158/256 (61%), Positives = 190/256 (74%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 430 YKLCKVKRVATGPXNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESXNL 609
YKLCKVKRV G VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 610 CMITGXRNLGRVGTIVSARDIPAPSNIVHIKXSTGTHLRHXX*TTCS*SXKXTKAYISLP 789
M+TG RN+GRVGTIV I+H+K + + + K++ISLP
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRL-SNVFVIGETGKSWISLP 239
Query: 790 XGKGIXLTIXXEXDKR 837
GKG+ L+I E D+R
Sbjct: 240 KGKGVKLSITEERDRR 255
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 334 bits (822), Expect = 7e-93
Identities = 158/256 (61%), Positives = 190/256 (74%)
Frame = +1
Query: 70 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 249
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 250 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAK 429
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRIT EEAK
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAK 120
Query: 430 YKLCKVKRVATGPXNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESXNL 609
YKLCKVKRV G VP+LVTHDGRTIRYPDPLIKVND+I+L++ T KI FIKF++
Sbjct: 121 YKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQ 180
Query: 610 CMITGXRNLGRVGTIVSARDIPAPSNIVHIKXSTGTHLRHXX*TTCS*SXKXTKAYISLP 789
M+TG RN+GRVGTIV I+H+K + + + K++ISLP
Sbjct: 181 VMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRL-SNVFVIGEAGKSWISLP 239
Query: 790 XGKGIXLTIXXEXDKR 837
GKG+ L+I E D+R
Sbjct: 240 KGKGVKLSITEERDRR 255
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 2.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -3
Query: 324 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 169
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 27.1 bits (57), Expect = 3.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 26 GNS*DLLSRFNTCPTWREALRS 91
G + D+L TCPTWR +L S
Sbjct: 407 GYTLDVLGTSATCPTWRRSLSS 428
>SPBC31E1.04 |pep12||SNARE Pep12|Schizosaccharomyces pombe|chr
2|||Manual
Length = 317
Score = 26.6 bits (56), Expect = 4.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 134 LSNIHALGAFKRFKCFLGPRAMLDKY*IEKANLKN 30
++N H+ A KR CFL AM + + ANL N
Sbjct: 230 IANEHSRKARKRSFCFLKSFAMFSSFRSQNANLYN 264
>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 6.4
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +3
Query: 498 WPHHPLPRPTYQSQR 542
WPHH LP + SQR
Sbjct: 265 WPHHNLPSQFFTSQR 279
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,301,286
Number of Sequences: 5004
Number of extensions: 65658
Number of successful extensions: 168
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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